Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1483 atggGAGGCTGCTTTTCTTCCAAACCATCCTTCACAATCAACAATGTCCGTTTGGTTCATCTGAGTGGTTTTGTGGAGGATTTTGAGGAGCCAATTTCAGTGAACCAAGTCACTGGTACCCCCCCAAGGCACTTTGTTTGTACCTCAGTTCAGCTTCTTTCCTCTTGCTCAAAACCATTGAATGGAGACACCCAACTCCAACCTGGGAATGTTTACTTCATGCTACCCTACTCAATCCTTCAAGCTGATGTTTCTCCTGTGGATTTGGCTTCCCTTGCAAAGAGGCTCACTGCAATAGCCAAAACTAGCAGGTGTGAGGACAAAAAGTCCTCCCTGAAAGATGGTCCTTTGTCAAGCCAACATGGGTTGAGCCCTGTTTGGAGTTCACCTTCAAGGAGTCCTGGCAGACTTGGTGTGGTTGAGCAAAAGGGTATGCCATATGGAGGACGAAGCCCGTGTCGAATGCAGCCATGGAAGCCTATCTTGGACACCATCAGAGAGAAGTCTTTCAATCGGAGAAGTGAATCAGATTTGCAAGAATATAATTGA 549 0.4627 MGGCFSSKPSFTINNVRLVHLSGFVEDFEEPISVNQVTGTPPRHFVCTSVQLLSSCSKPLNGDTQLQPGNVYFMLPYSILQADVSPVDLASLAKRLTAIAKTSRCEDKKSSLKDGPLSSQHGLSPVWSSPSRSPGRLGVVEQKGMPYGGRSPCRMQPWKPILDTIREKSFNRRSESDLQEYN 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1483 182 PANTHER OS06G0700300 PROTEIN 1 178 - -
Ssu1g1483 182 MobiDBLite consensus disorder prediction 105 155 - -
Ssu1g1483 182 MobiDBLite consensus disorder prediction 115 131 - -
Ssu1g1483 182 Pfam PADRE domain 1 167 IPR025322 -
Ssu1g1483 182 PANTHER DUF4228 DOMAIN PROTEIN-RELATED 1 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1483 Ssu-Chr1 34642186 34642734 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1483 - - gmx:100810460 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1483 1 34642186 34642734 Ssu1g1483 1 34642186 34642734 ECH
Ssu6g0709 6 11085082 11085597 Ssu1g1483 1 34642186 34642734 PCT