Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1470 ATGGGATGTTCACATTCAAGGTTGGATGATGAAGAGTCAGTTCAGCTTTGTAAAGACAGAAAGAGGTTCATCAAGCAAGCTGTTGAACAAAGGACTCAATTCGCCACTGGACACATAGCATACATAGAATCTCTGAAAAGAGTTTCAGCAGCACTTCGCGATTACACTGAAGGCGATGAGCCTCATGAGTTCTCATTAGACACAGTCATCACCCCACCTTTCACACCTGTGAAGAAGCAACCTGGCCCAGGATTCATTCCCATATCAGCAAAACCCTTCACAACAACAGCAGCAATTGAGTTTGGGGTTGGACCAAACTCTACTTTGAAAGTGAATTACCTTAGGCCTGGTGGTAACCCAGCAATTTCAGTTGAGGAAAGGCCTCAATCCCCAGAAATGGTTCGGGTTGAGACGTATTATTCTCCAATGCAGCAGTATGGCATTGATGGTTTTTTCAACATGCAATACTCACCGGTGAATCAATCAATTTTTGCTTACTCTCCCAATAACATGCCTAATATCCCTCCCCCTTCACCTCAAGCTTCCCAATGGGATTTCTTTTGGAATCCCTTTTCATCATTGGACAGTTATGGTTATCCTGGAAGAAGTAGCCTTGATCAGACTGCCATGGATGATGAATACAGAGGACTTAGGCAGGTTAGAGAAGAAGAGGGAATACCAGACCTGGAAGAAGATGAAATTGAACAAGAAGATTATGTTGGGAAGAGAAATGTAGCAGAAGAAAGAACTAGACATGATATAAATGCTTCCAAAGAAGAAGTTATTGTTGAAGATGTTGATGAGGAGGACGAGGATGAAGAGGACGAGGAGGAAGAGGAGGGAACAGACATTGAAGATGAAACTGAGACTGAGCATGATGCCAAAGATTCACAAGCTCATGGTAGTGCAAGTTTTGAAGTATCAAAAGCTCAAGCTGCAGGTCATATTGAATCAAGCCATAGGGAAATGGCAATTGGCAAGCAAGAAGCTGGGGAAGAAACACCAGGTTTTACCGTTTATGTAAACCGAAGGCCAACAAGCATGGCAGAAGTGATCAATGATCTTGAAACTCAATTCACAATCGTCTGCAATGCAGCCAATGATGTCTCAGCATTGTTAGAGACCAAGATATCTCAGTATTTATTGACATCTAATGAACTTTCAGCATCAAAGTTGTTGAACCCAGTAGCTCTGATCCGCTCAGCTTCTTCACGCTCTTCTTCATCAAGATTTTTGGTGAATTGTTCAAGCACTAGCAAGGAAGGTTGTGAGGGCACTAAGGATCTCTCAGAGGAACATTGTATGTTATCTGGTAGTCACCACTCCACTTTGGACAGATTAAATGCATGGGAGAAGAAGCTCTATGAGGAAGTCAGGTCTGGAGAACGTGTCCGAATTGCATATGAGAAGAAATGCAAGCAACTCAGGAACCTTGATGTAAAAGGAGAGGACCCTTCTTGTGCAGATAAAACAAGAGAAGTCATTAGAGATCTAGATACCCAGATAACGGTTTCAATACACTCAGTTGAAGCTATTTCAAGGAGAATTGAAGCTCTAAGGGATGAAGAGTTGCATCCCCAACTTCTTGAATTGGTGCAAGGGCTGGAAAGGATGTGGAAAGTGATGGCAGAATGCCATCAGACACAGAAGAGGACCTTAGATGAAGCTAAGATTCTTCTAGCTGGCACTCCTTCTAAATTACATGCCAGAAAACAGTCTTCCATCTCAATGACTGATCCAAACAGGCTTGCGCGTTCAGCCTCCAATCTTGAATTCGAGTTAAGGAACTGGAGAAACGCCTTTGAGTCATGGATCACTTCTCAAAGATCCTACATTCATGCACTAACTGGATGGCTTCTTCGATGCATGGGATCCGAGCCTGACGTATCAAAGCTACCATGCTCTCCTCGTATGTCCGGTGGCACTCACCCTTTGTTTGGACTCTGTGTTCAGTGGTCTAGGCGCCTAGATGCCATACGTGAAAAGGCAGTGCTTGATGGCTTAGACTTTTTTGCAGCTGGAATGGGGTCCCTCTATGCACATCAGTTGAGAGAAGATTCTAGGAGAAACTCATTTGGATCAACAAAACAAAGCAATGGGAACATGGAAATGGTGGAAGTTGGTGAGGTGGAAGAGGTAATGGCTCCAGAGAAACTGGCTGAAGTTGCCATTAAGGTGCTTTGTGCTGGAATGTCTGTTGCTATTAGCTCACTGGCAGAGTTTGCTTTGGCTTCTGCTGAGGGGTACAATGAAGTTGTTAAGCAATGGGACAATGGGAAGTGTCAAAATACTACTTCTAGTGAGACTAGAACATAG 2316 0.4361 MGCSHSRLDDEESVQLCKDRKRFIKQAVEQRTQFATGHIAYIESLKRVSAALRDYTEGDEPHEFSLDTVITPPFTPVKKQPGPGFIPISAKPFTTTAAIEFGVGPNSTLKVNYLRPGGNPAISVEERPQSPEMVRVETYYSPMQQYGIDGFFNMQYSPVNQSIFAYSPNNMPNIPPPSPQASQWDFFWNPFSSLDSYGYPGRSSLDQTAMDDEYRGLRQVREEEGIPDLEEDEIEQEDYVGKRNVAEERTRHDINASKEEVIVEDVDEEDEDEEDEEEEEGTDIEDETETEHDAKDSQAHGSASFEVSKAQAAGHIESSHREMAIGKQEAGEETPGFTVYVNRRPTSMAEVINDLETQFTIVCNAANDVSALLETKISQYLLTSNELSASKLLNPVALIRSASSRSSSSRFLVNCSSTSKEGCEGTKDLSEEHCMLSGSHHSTLDRLNAWEKKLYEEVRSGERVRIAYEKKCKQLRNLDVKGEDPSCADKTREVIRDLDTQITVSIHSVEAISRRIEALRDEELHPQLLELVQGLERMWKVMAECHQTQKRTLDEAKILLAGTPSKLHARKQSSISMTDPNRLARSASNLEFELRNWRNAFESWITSQRSYIHALTGWLLRCMGSEPDVSKLPCSPRMSGGTHPLFGLCVQWSRRLDAIREKAVLDGLDFFAAGMGSLYAHQLREDSRRNSFGSTKQSNGNMEMVEVGEVEEVMAPEKLAEVAIKVLCAGMSVAISSLAEFALASAEGYNEVVKQWDNGKCQNTTSSETRT 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1470 771 MobiDBLite consensus disorder prediction 250 332 - -
Ssu1g1470 771 Pfam Protein of unknown function (DUF632) 348 675 IPR006867 -
Ssu1g1470 771 PANTHER DUF630 FAMILY PROTEIN 1 771 - -
Ssu1g1470 771 MobiDBLite consensus disorder prediction 262 290 - -
Ssu1g1470 771 Pfam Protein of unknown function (DUF630) 1 59 IPR006868 -
Ssu1g1470 771 PANTHER UNCHARACTERIZED 1 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1470 Ssu-Chr1 33958458 34113827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1470 424 696 Acyl Lipid Metabolism Gene Families AT2G27090 38.043 9.83e-51 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1470 - - gmx:100780704 1300.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1470 1 33958458 34113827 Ssu1g1470 1 33958458 34113827 ECH
Ssu6g0712 6 11244101 11247915 Ssu1g1470 1 33958458 34113827 PCT