Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02949 ATGACTGCGCTCGCCGGTGGGCCGGTGGGCCGTTACATGATTGACACTTGTGGAAGCATTAAATTGAGTGATGCAAACTTCAAATTAGAATTTCGATCTGTTTCTGATTGGTTTGAAATGCGATTGGACTTGATTCTCCTGAATCGGACATTGCTTTTGTCTTATATTGATGTTCGAGATTTTGGGGATTGGAGCGACATCGCAGGGAAGTGTTTGAGCGTTCTCAGCGTCGTTGTGTTTTCGGGATCATCTACATTGGATGCGTTTGTTTCTGAAGCTGCTTTGGCGTTGGACAATGCTTTTAGGATAGTAGAATTGCTATTGCACATGACAGGGTTCACTTCCAATGGCAACTCTCCTCGAATTATTGAAATTTTGCACAGTGCAGTGCAAAATCTGTCTTGGATGCAAATGACGGACAAGATGACACAAGATGCAGTTTTCTGCTACGCTTTTGTCTTTTCCATGAGAGATCTGGATCCAGCTTTCCAGGGAGCTGGACAAAAGGCGTATCCTGCTTCTCGATTACATATTGTGTTTTTCACTATTTATCAGATTTATTTAAGCGGACTTGAAATATGGCGTATTGAGAATTTTAATCCAGTTCCTGTCCCAAAGTCCTCTTATGGGAAATTTTTCACTGGAGACTCCTATGTGATCTTAAAGACAACTGCATCAAAAAGTGGTGCTCTGCGCCATGACATCCATTACTGGCTTGGTAAAGACACCAGTCAGGATGAAGCTGGTGTTGCAGCCATCAAAACAGTTGAGATGGATGCAGCTCTTGGAGGACGTGCTGTTCAGTATCGTGAAGTGCAAGGCCATGAAACTGAAAAGTTCCTGTCTTATTTCAAACCATGTATTATCCCTCAAGAAGGTGGAATTGCTTCTGGCTTCAAACATCCTGAAGCTGAAAAACATAAAACACGGTTGTTTGTTTGCAGAGGAAAACATGTTGTACATGTCAAAGAGGTTCCATTTGCGAGAGCTTCACTGAACCATGATGATATTTTTGTTCTGGATACTGAATCAAAAATTTTCCAATTTAATGGTTCCAATTCATCTATTCAAGAAAGGGCTAAAGCTTTGGAAGTTGTACAGTATATTAAAGATACCTACCATGATGGGAAATGTGATGTAGCTGCTGTTGAGGATGGAAAGTTGATGGCTGATGCTGAAACTGGGGAATTCTGGGGTTTCTTTGGGGGATTTGCTCCTCTTCCACGAAAAACAGCCGGTGATGATGATAAGCCTACTGATTCTCACCCTCCGAAGCTGCTCTGTATTGAGAAGGGCCAGGCAGAACCTGTGGAGGCTGATCCTTTGAAAAGGGAATTATTAGACACAAATAAATGCTATATTCTTGATTGTGGGTTTGAAGTGTTTGTCTGGATGGGAAGAAATACCACGCTTGATGAAAGAAAAAGTGCAAGTGGAGTTGCAGATGAGTTAGTTAGCAGCACTGATAAACTGAAACCCCAAATAATTCGTGTGATAGAAGGATTTGAAACAGTGATGTTCAGGTCCAAATTTGATTCTTGGCCTCAGACAACTGATGTAACAGTATCTGAAGATGGTCGTGGCAAGGTAGCTGCTCTTCTAAAACGTCAAGGAGTAAATGTGAAAGGCTTGTTGAAAGCTGATCCAGTGAGGGAAGAACCTCAACCCCACATCGATTGCACAGGACATTTGCAGGTTTGGCGTGTGAACGGTCAGGAAAAGATTCTTCTTCAAGCTTCTGATCAGTCAAAATTTTATAGTGGAGATTGCTACATCTTTCAGTATACATATCCTGGAGAGGATAAAGAAGATTGTCTTATTGGAACTTGGATTGGAAAGAATAGTGTTCAGGAAGAACAAGCTTCAGCTAACTCATTGGCAAGCTCAATGGTTGAGTCAATGAAGTTTCTTGCTTGCCAGGCTCGTATATATGAAGGCAATGAACCAATTCAATTTTATTCTCTCCTCCAAAGCTTCATTGTTTTTAAGGGTGGGCTTGGTGAAGGATACAAGACTTACATTGCAGAAAAGGAAATTCCTGATGAGACATACAATGAGAATGGTGTTGCATTATTCCGCATCCAAGGCTCTGGACCAGAGAATATGCAAGCTATACAATTTGAACCAGTTGCATCTTCGTTAAATTCCTCTTATTGCTACATACTTCATAATGGGCCTGCTGTCTTTACTTGGTCTGGAAACTCTACAAGTGCAGAAGACCAGGAACTTGTTGAGAGGCTGCTGGATTTGATAAAGCCAAATTTACAATCCAAACCACAGAGGGAAGGTTCTGAATCTGAACAGTTTTGGGATTTGTTAGGAGGAAAGTCAGAATATCCCAGTCAAAAGATCCTTAGAGAGGCAGAAAGTGATCCTCACCTATTTTGTTGTCACTTCTCAAAAGGAAATTTAAAGTATGAAAACCTGGGAGCACTGCTTCTTGCTACAATGGTAAGAATTGAAGAAGGAAATGTAACCACAATCACCTCTCATCCTCAACCTCTTCATCCCTCCCCGCCTTGCATGTTGATTCCAGCATTCCTTTCTCCTATCCTCAGCTGTCACGTGTCCATTATGTTTGAAATTTCTCTTTCTTCTATGATGGAATCCTCCAATAGTTCCTATGCATTTGGCCTTGACCGCCCATGGATTGCGCAGGATAAATTACTTGGATTCATTTCTCTGCAATGCATTAATCTGAAGCAATATTTTCAGGTGACAGAGGTATACAACTTCTCCCAGGATGATTTGATGACAGAAGACATTTTCATCTTGGATTGTCATTTGGAAATCTTTGTCTGGGTTGGACAGCAGGTTGACTCCAAGAGTAGAATGCAGGCTCTAACAATTGGCGAGAAATTTCTTGAGCATGATTTTCTTCTAGAAAAATTATCTCGTGTAGCTCCAATATATGTTGTTATGGAAGGGAGTGAGCCACCTTTCTTCACACGCTTCTTTAAATGGGATTCTGCAAAATCTACAATGCTGGGCAACTCATTTCAAAGGAAGCTTACACTTGTGAAAAGTGGGGGTGCTCCACTTTTGGATAAACCCAAACGGAGAACACCTGTATCTTACGGGGGAAGGTCAAGTAGTGTGCCAGATAAATCCCAGCGTTCCTCCCGCAGCATGTCTGTCAGTCCTGATCGTGTTCGTGTGAGGGGCAGGTCTCCAGCCTTTAATGCTCTAGCAGCTAATTTTGAGAACCCTAATGCTAGGAACCTTTCAACCCCGCCTCCTGTAGTTAGGAAGCTGTATCCAAAATCTGTGACACCAGATTCTGCAATACTGGCACCAAAAGCTGCAGCCATAGCTGCACTTAGTTCTTCTTTTGAACAGCCACCTCCAGCACGGGAAACTATGATACCTCGGTCACTTAAAGTGAGTCCTGTAATGCCAAAATCAAACCCTGAGAAAAATGACAAGGAGAATGCTGTGAGCACTAGAGTGGAATCTCTTACAATACAGGAAGATGTGAAAGAGAATGAAGTTGAAGATGAGGAAGGTCTTGTGATTTATCCATATGAACGCCTTAAAATAACAGCGACAGATCCTGTAACAAGTATTGATGTGACTAAGCGAGAGACTTATCTATCATCTGCGGAGTTCAAAGAGAAATTTGGGATGTCCAAGGATGCCTTTTACAAATTGCCCAAATGGAAACAAAATAAACTCAAAATGGCTGTTCAGTTATTCTGA 3699 0.418 MTALAGGPVGRYMIDTCGSIKLSDANFKLEFRSVSDWFEMRLDLILLNRTLLLSYIDVRDFGDWSDIAGKCLSVLSVVVFSGSSTLDAFVSEAALALDNAFRIVELLLHMTGFTSNGNSPRIIEILHSAVQNLSWMQMTDKMTQDAVFCYAFVFSMRDLDPAFQGAGQKAYPASRLHIVFFTIYQIYLSGLEIWRIENFNPVPVPKSSYGKFFTGDSYVILKTTASKSGALRHDIHYWLGKDTSQDEAGVAAIKTVEMDAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGIASGFKHPEAEKHKTRLFVCRGKHVVHVKEVPFARASLNHDDIFVLDTESKIFQFNGSNSSIQERAKALEVVQYIKDTYHDGKCDVAAVEDGKLMADAETGEFWGFFGGFAPLPRKTAGDDDKPTDSHPPKLLCIEKGQAEPVEADPLKRELLDTNKCYILDCGFEVFVWMGRNTTLDERKSASGVADELVSSTDKLKPQIIRVIEGFETVMFRSKFDSWPQTTDVTVSEDGRGKVAALLKRQGVNVKGLLKADPVREEPQPHIDCTGHLQVWRVNGQEKILLQASDQSKFYSGDCYIFQYTYPGEDKEDCLIGTWIGKNSVQEEQASANSLASSMVESMKFLACQARIYEGNEPIQFYSLLQSFIVFKGGLGEGYKTYIAEKEIPDETYNENGVALFRIQGSGPENMQAIQFEPVASSLNSSYCYILHNGPAVFTWSGNSTSAEDQELVERLLDLIKPNLQSKPQREGSESEQFWDLLGGKSEYPSQKILREAESDPHLFCCHFSKGNLKYENLGALLLATMVRIEEGNVTTITSHPQPLHPSPPCMLIPAFLSPILSCHVSIMFEISLSSMMESSNSSYAFGLDRPWIAQDKLLGFISLQCINLKQYFQVTEVYNFSQDDLMTEDIFILDCHLEIFVWVGQQVDSKSRMQALTIGEKFLEHDFLLEKLSRVAPIYVVMEGSEPPFFTRFFKWDSAKSTMLGNSFQRKLTLVKSGGAPLLDKPKRRTPVSYGGRSSSVPDKSQRSSRSMSVSPDRVRVRGRSPAFNALAANFENPNARNLSTPPPVVRKLYPKSVTPDSAILAPKAAAIAALSSSFEQPPPARETMIPRSLKVSPVMPKSNPEKNDKENAVSTRVESLTIQEDVKENEVEDEEGLVIYPYERLKITATDPVTSIDVTKRETYLSSAEFKEKFGMSKDAFYKLPKWKQNKLKMAVQLF 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02949 1232 Gene3D Severin 186 302 IPR029006 -
Spst9g02949 1232 CDD gelsolin_S2_like 308 393 - -
Spst9g02949 1232 CDD gelsolin_S1_like 190 294 - -
Spst9g02949 1232 SUPERFAMILY Actin depolymerizing proteins 189 317 - -
Spst9g02949 1232 CDD gelsolin_S5_like 687 778 - -
Spst9g02949 1232 SUPERFAMILY Actin depolymerizing proteins 307 408 - -
Spst9g02949 1232 MobiDBLite consensus disorder prediction 1128 1150 - -
Spst9g02949 1232 FunFam Villin-4 555 689 - -
Spst9g02949 1232 Pfam Villin headpiece domain 1197 1232 IPR003128 GO:0003779|GO:0007010
Spst9g02949 1232 Gene3D Severin 687 783 IPR029006 -
Spst9g02949 1232 Gene3D Severin 417 526 IPR029006 -
Spst9g02949 1232 FunFam Villin-like 1 1170 1232 - -
Spst9g02949 1232 Gene3D Villin headpiece domain 1170 1232 IPR036886 GO:0003779|GO:0007010
Spst9g02949 1232 SUPERFAMILY VHP, Villin headpiece domain 1157 1232 IPR036886 GO:0003779|GO:0007010
Spst9g02949 1232 Gene3D Severin 303 416 IPR029006 -
Spst9g02949 1232 FunFam Gelsolin 182 301 - -
Spst9g02949 1232 CDD gelsolin_S6_like 896 990 - -
Spst9g02949 1232 MobiDBLite consensus disorder prediction 1011 1052 - -
Spst9g02949 1232 FunFam Gelsolin 690 782 - -
Spst9g02949 1232 Pfam Gelsolin repeat 580 637 IPR007123 -
Spst9g02949 1232 Pfam Gelsolin repeat 320 385 IPR007123 -
Spst9g02949 1232 Pfam Gelsolin repeat 907 982 IPR007123 -
Spst9g02949 1232 Pfam Gelsolin repeat 436 507 IPR007123 -
Spst9g02949 1232 Pfam Gelsolin repeat 198 281 IPR007123 -
Spst9g02949 1232 CDD gelsolin_S4_like 558 655 - -
Spst9g02949 1232 SMART VHP_1 1197 1232 IPR003128 GO:0003779|GO:0007010
Spst9g02949 1232 Gene3D Severin 558 670 IPR029006 -
Spst9g02949 1232 ProSiteProfiles Headpiece (HP) domain profile. 1167 1232 IPR003128 GO:0003779|GO:0007010
Spst9g02949 1232 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 425 597 IPR036180 -
Spst9g02949 1232 PANTHER VILLIN 190 1222 IPR007122 GO:0051015
Spst9g02949 1232 FunFam Villin-like 1 302 417 - -
Spst9g02949 1232 SUPERFAMILY Actin depolymerizing proteins 895 999 - -
Spst9g02949 1232 SMART VILL_6 562 659 IPR007122 GO:0051015
Spst9g02949 1232 SMART VILL_6 424 514 IPR007122 GO:0051015
Spst9g02949 1232 SMART VILL_6 189 287 IPR007122 GO:0051015
Spst9g02949 1232 SMART VILL_6 307 404 IPR007122 GO:0051015
Spst9g02949 1232 SMART VILL_6 689 776 IPR007122 GO:0051015
Spst9g02949 1232 SMART VILL_6 893 989 IPR007122 GO:0051015
Spst9g02949 1232 MobiDBLite consensus disorder prediction 1025 1047 - -
Spst9g02949 1232 CDD gelsolin_S3_like 424 513 - -
Spst9g02949 1232 PRINTS Gelsolin family signature 702 722 IPR007122 GO:0051015
Spst9g02949 1232 PRINTS Gelsolin family signature 581 597 IPR007122 GO:0051015
Spst9g02949 1232 PRINTS Gelsolin family signature 639 659 IPR007122 GO:0051015
Spst9g02949 1232 PRINTS Gelsolin family signature 762 781 IPR007122 GO:0051015
Spst9g02949 1232 PRINTS Gelsolin family signature 606 624 IPR007122 GO:0051015
Spst9g02949 1232 PRINTS Gelsolin family signature 493 514 IPR007122 GO:0051015
Spst9g02949 1232 SUPERFAMILY Actin depolymerizing proteins 680 784 - -
Spst9g02949 1232 Gene3D Severin 895 1003 IPR029006 -
Spst9g02949 1232 SUPERFAMILY Actin depolymerizing proteins 552 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02949 Spst-Chr9 63617709 63633053 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02949 - - gmx:100809968 1216.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02949 9 63617709 63633053 Spst3g03489 3 84721433 84733874 PCT