Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03489 ATGTCCGTTTCTATGAGAGATTTGGATCCAGCTTTCAAGGGAGCTGGCCAAAAGGCGTATCCTGCACTAGCTAATAATAATATATCATGCTGTTTAACAATTATCATATTTCATCCTGACATAGTTCATTCATGTGGACTTGAAATATGGCGTATCGAGAATTTTAATCCAGTTCCCATCCCTGAATCATCTTATGGAAAGTTTTTCACTGGGGATTCCTATATGATCTTGAAGGACTTAATCCTAAGAGGCTTGAAAGGTCCTTCACACCGATGTCCTGTGCATGAGACTCCCACTATTGTGGGGTCTAGGCAGGGTTTTACAACTGCTTCAAAAAGTGGTGCTCTGCGTCATGATATCCATTATTGGCTTGGTAAAGAGACCAGTCAGGATGAAGCTGGTGTTGCAGCAATCAAGACAGTTGAGTTGGATGCAGCTCTAGGAGGACGAGCTGTTCAGTATCGTGAAGTACAAGGCCATGAAACTGAAAAGTTCCTCTCTTATTTCAAACCATGTATCATACCTCAAGAAGGTGGAGCTGCCTCTGGTTTTAAACATGTCGAGGCTGAAGAACATAAGACACGGTTGTTTGTATGCAAAGGGAAACATGTGGTTCCATTTGCTCGATCTTCACTGAACCATGATGATATTTTTATTCTGGACACTGAGTCCAAAATTTTCCAATTTAATGGTTCCAATTCATCAATTCAAGAAAGGGCTAAAGCATTGGAAGTTGTACAGTTTATTAAGGATACCTACCATTGTGGGAAATGTGAGATAGCTTCTATTGAGGATGGAAAACTGATGTCTGATTCTGAAACTGGAGAATTCTGGGGTTGCTTTGGGGGCTTTGCTCCTCTTCCACGGAAAACAGTCAGGGATGATGATGATGATAAGCCTGCTGATTCTCATCCACCAAAGATACTTTGTGTTGACAAGGGGAAGATAGAACCTATTGAAACTGATTCTTTGACCAAGGAATTGCTGGAGACCAACAAATGCTATATTATAGATTGTGGGTTGGAAGTGTTTGCATGGATGGGAAGAAACACATCTCTTGATGAAAGAAAAAGTGCAGGCGGAGCTGCAGAGAAGTTAGTCAGTGACACTGGAAGACCAAAGTCCCATATAATTCGTGTAATTGAAGGGTTTGAAACAGTAATGTTCAAGTCCAAGTTTGATTCTTGGCCTCAGGGAACTCATGTAATGTCTGAAGATGGTCGTGGCAAGGTAGCAGCACTTCTAAAACGCCAAGGCTTGGATGTCAAGGGTCTCTTAAAATCTGAACCTGTAAAAGAGGAACCTCAACCTTACATAGATTGCACAGGAGATTTGCAGGTTTGGCATGTGAATGGTCAGGAAAAGATTCTTCTTCCAGCCACTGATCAGTCAAAATTTTATAGTGGAGATTGCTATATCTTTCAATATTCATATCCTGGAGAAGATAAGGAAGAGTATCTTGCGGGAACATGGATTGGAAAGACTAGTGTTGAGGAAGAGAGGGCTTCAGCTCTTTCACTAGCAAGCAAAATGGTTGAGTCAATGAAGTTTCTTCCTACCCAGGCTCGTATCTATGAAGGCAGTGAACCAATTCAATTTCATGCCATCCTCCAAAGCTGTATTATTTTTAAGGGTGGACTTAGTGATGGATACAAGAAATACATTGCCGAGAAGGAAATTCCAGATGAGACATATAGCGAGGATGGTGTTGCATTATTCCGCATCCAGGGCCTTGGACCAGAAAATATGCAAGCTATACAAGTTGAACCAGTTGCTTCCTCCTTGAATTCCAGTTATTGCTACATACTTCATAGCGGACCCACTGTTTTTACTTGGTCTGGAGGTTTAGCAACTTCAGATGATCAAGAGCTTGCTGAGAGAATGCTGGATTTGATTAAGGGTCCTGGGTTTGATCCGGGCAGGTGCTATCACCCAAGCCACATTACCCATCCTGGGAACTACGTCTATCCGGATTTACAATGCAAACCACATAAGGAAGGCGTAGAATCGGAGCTGTTTTGGGATTGGTTGGGCGGAAAATCGGAATATCCCAGTCAAAAGATCGCGAGGGATGAAGAAAATGACCCTCACTTATTTTCTTGCAACTTCTCACAAGGAAATTTAAAGGTGAAAGAGATATACAACTTTACCCAGGATGATTTGATGACAGAGGATATTTACATCTTGGATTGTCACTCTGAAATCTTCGTCTGGATTGGCCAGCAGGTTGACCCAAAGAGTAGAATGCAGGCTCTAACAATTGGTGAGAAATTTCTCGAGCTTGATTTTCTTCTAGAAACATTATCTCGTGAAGCTCCATTATATATTGTCATGGAAGGTAGTGAGCCACCTTTCTTCACTCGCTTCTTTAAATGGGAATCTGCAAAATCTGCAATGCTGGGAAACTCGTTTCAAAGGAAGCTTGCAATCATCAAAAATGGGGGAGCGCCGCTTGTACTTAAACATAAACGAAGAGCAACAGTATCTTATGGGGGAAGGTCTGGTGGTGTGCCAGATAAATCTCAGCGTTCCCGCAGCATGTCTGTCAGTCCTGATCGTGTTCGTGTGAGGGGCAGATCTCCAGCCTTTAATGCATTAGCAGCTAATTTTGAGAACACAAATACCAGGAACCTTTCCACTCCACCTCCAGTGGTTAGAAAACTGTACCCAAAATCTGTGGCACAGGATACAGCAAAACCGGCACCTAAGTTTTCAGCCATATCTCATCTTACTTCTAGTTTTGAACGATCATCAGCGCTAGAAAATTTGATTCCTCGGTCACAAAAAGGGAGTTTAGTTACCGCAATATCAAACCCGGAGACAATTGACAAGGAGGGTTCTATGAGCAGGAGAATAGAATCTCTTACCATAGAGGAGGGTGTGAAAGAGGGTGAAGCTGAAGATGATGAAAGTCTCCCAGTTTACCCATATGATCGCATTAACACAGATTCTACAGATCCTATAACAGATATTGACGTTACTAAACGAGAGGCCTATTTGTCATCTGCCGAGTTCCAAGAGAAATTAGGGACGACAAAGAAAGAATTTTACAAGTTGCCAAAATGGAAACAGAACAAACTCAAAATGGCAGTTCAGTTGTTCTGA 3105 0.4209 MSVSMRDLDPAFKGAGQKAYPALANNNISCCLTIIIFHPDIVHSCGLEIWRIENFNPVPIPESSYGKFFTGDSYMILKDLILRGLKGPSHRCPVHETPTIVGSRQGFTTASKSGALRHDIHYWLGKETSQDEAGVAAIKTVELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEGGAASGFKHVEAEEHKTRLFVCKGKHVVPFARSSLNHDDIFILDTESKIFQFNGSNSSIQERAKALEVVQFIKDTYHCGKCEIASIEDGKLMSDSETGEFWGCFGGFAPLPRKTVRDDDDDKPADSHPPKILCVDKGKIEPIETDSLTKELLETNKCYIIDCGLEVFAWMGRNTSLDERKSAGGAAEKLVSDTGRPKSHIIRVIEGFETVMFKSKFDSWPQGTHVMSEDGRGKVAALLKRQGLDVKGLLKSEPVKEEPQPYIDCTGDLQVWHVNGQEKILLPATDQSKFYSGDCYIFQYSYPGEDKEEYLAGTWIGKTSVEEERASALSLASKMVESMKFLPTQARIYEGSEPIQFHAILQSCIIFKGGLSDGYKKYIAEKEIPDETYSEDGVALFRIQGLGPENMQAIQVEPVASSLNSSYCYILHSGPTVFTWSGGLATSDDQELAERMLDLIKGPGFDPGRCYHPSHITHPGNYVYPDLQCKPHKEGVESELFWDWLGGKSEYPSQKIARDEENDPHLFSCNFSQGNLKVKEIYNFTQDDLMTEDIYILDCHSEIFVWIGQQVDPKSRMQALTIGEKFLELDFLLETLSREAPLYIVMEGSEPPFFTRFFKWESAKSAMLGNSFQRKLAIIKNGGAPLVLKHKRRATVSYGGRSGGVPDKSQRSRSMSVSPDRVRVRGRSPAFNALAANFENTNTRNLSTPPPVVRKLYPKSVAQDTAKPAPKFSAISHLTSSFERSSALENLIPRSQKGSLVTAISNPETIDKEGSMSRRIESLTIEEGVKEGEAEDDESLPVYPYDRINTDSTDPITDIDVTKREAYLSSAEFQEKLGTTKKEFYKLPKWKQNKLKMAVQLF 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03489 1034 Pfam Villin headpiece domain 999 1034 IPR003128 GO:0003779|GO:0007010
Spst3g03489 1034 CDD gelsolin_S5_like 568 682 - -
Spst3g03489 1034 Gene3D Severin 687 807 IPR029006 -
Spst3g03489 1034 SUPERFAMILY Actin depolymerizing proteins 669 791 - -
Spst3g03489 1034 Gene3D Severin 299 407 IPR029006 -
Spst3g03489 1034 FunFam Villin-4 300 406 - -
Spst3g03489 1034 SUPERFAMILY Actin depolymerizing proteins 44 202 - -
Spst3g03489 1034 Gene3D Severin 38 187 IPR029006 -
Spst3g03489 1034 PANTHER VILLIN 45 1024 IPR007122 GO:0051015
Spst3g03489 1034 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 308 478 IPR036180 -
Spst3g03489 1034 FunFam Villin-4 436 572 - -
Spst3g03489 1034 Gene3D Severin 437 569 IPR029006 -
Spst3g03489 1034 Gene3D Severin 188 298 IPR029006 -
Spst3g03489 1034 SMART VILL_6 570 680 IPR007122 GO:0051015
Spst3g03489 1034 SMART VILL_6 443 540 IPR007122 GO:0051015
Spst3g03489 1034 SMART VILL_6 306 396 IPR007122 GO:0051015
Spst3g03489 1034 SMART VILL_6 192 284 IPR007122 GO:0051015
Spst3g03489 1034 SMART VILL_6 696 793 IPR007122 GO:0051015
Spst3g03489 1034 SMART VILL_6 45 172 IPR007122 GO:0051015
Spst3g03489 1034 CDD gelsolin_S6_like 695 792 - -
Spst3g03489 1034 MobiDBLite consensus disorder prediction 830 854 - -
Spst3g03489 1034 CDD gelsolin_S3_like 313 395 - -
Spst3g03489 1034 ProSiteProfiles Headpiece (HP) domain profile. 969 1034 IPR003128 GO:0003779|GO:0007010
Spst3g03489 1034 SMART VHP_1 999 1034 IPR003128 GO:0003779|GO:0007010
Spst3g03489 1034 SUPERFAMILY Actin depolymerizing proteins 562 689 - -
Spst3g03489 1034 CDD gelsolin_S2_like 193 282 - -
Spst3g03489 1034 Pfam Gelsolin repeat 320 389 IPR007123 -
Spst3g03489 1034 Pfam Gelsolin repeat 204 266 IPR007123 -
Spst3g03489 1034 Pfam Gelsolin repeat 713 786 IPR007123 -
Spst3g03489 1034 Pfam Gelsolin repeat 54 166 IPR007123 -
Spst3g03489 1034 CDD gelsolin_S4_like 437 536 - -
Spst3g03489 1034 CDD gelsolin_S1_like 45 179 - -
Spst3g03489 1034 SUPERFAMILY VHP, Villin headpiece domain 962 1034 IPR036886 GO:0003779|GO:0007010
Spst3g03489 1034 Gene3D Villin headpiece domain 972 1034 IPR036886 GO:0003779|GO:0007010
Spst3g03489 1034 PRINTS Gelsolin family signature 718 740 IPR007122 GO:0051015
Spst3g03489 1034 PRINTS Gelsolin family signature 747 766 IPR007122 GO:0051015
Spst3g03489 1034 PRINTS Gelsolin family signature 462 478 IPR007122 GO:0051015
Spst3g03489 1034 PRINTS Gelsolin family signature 375 396 IPR007122 GO:0051015
Spst3g03489 1034 PRINTS Gelsolin family signature 487 505 IPR007122 GO:0051015
Spst3g03489 1034 SUPERFAMILY Actin depolymerizing proteins 433 577 - -
Spst3g03489 1034 Gene3D Severin 570 686 IPR029006 -
Spst3g03489 1034 SUPERFAMILY Actin depolymerizing proteins 184 288 - -
Spst3g03489 1034 FunFam Villin-like 1 687 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03489 Spst-Chr3 84721433 84733874 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03489 - - gmx:100798962 1673.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03489 3 84721433 84733874 Spst3g03489 3 84721433 84733874 ECH
Spst3g03489 3 84721433 84733874 Spst9g02656 9 60638000 60640662 PCT
Spst9g02949 9 63617709 63633053 Spst3g03489 3 84721433 84733874 PCT