Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02922 ATGGAAATGGGAAATGATCATGCGTTTCTCTTTTTGGATGGTTTTTTTCTGGATTCTCAACCCGACGCTCTAAGATCCGTGTTACGCGTAACCCGACCCGAATGTAAACCCGACCCGGTAAACTTCCCTGTTCAATTTGGGCCAAGATGCTATTTAAACAAGAGCTTTAGAAAAGCCTATGGAGCTCTCAAGGACTCTACCAAGGTTGGCCTTGCCAAAGTCAATAGCGAATACAAGGAGTTGGATATTGCAATTGTAAAGGCTACCAATCACGTGGAATACCCTCCAAAGGAACGTCATATTCGAAAAATATTTTATGCAACATCAGCACACCAGCCACGAGCAGATGTCACATACTGCATTCATAAACTTTCCAAGAGACTTTCCAAAACTCGAAGCTGGATAGTTGCGATAAAGACATTAATAGTCATTCATAGGACTTTAAGAGAGGGTGATCCTACCTTCAGAGAAGAGCTTCTCAACTACTCACGTAGGGGACAAATTCTCCAAATATCCAACTTCAAAGATGACTCAAGCCCCCAAGCTTGGGATTGTTCTGCATGGGTTCGAACATATGCACTATTTTTAGAAGAACGACTTGAATGCTTTAGAGTCCTTAAATATGATATAGAATCAGAGCGTTTAACAAAACCATCACCAACTGCAACTAAAGCTCATAGTAGAACTCGATCATTGGCTAGCGAGGAACTGTTGGGGCAGTTACCTGCCCTACAACAACTCCTATATCGCCTTATTGGTTTGCAGTATGCATTGGCCCTGGTTTTGAAAGAAAGTTTCAAAATATACTGTGCACTCAATGATGGAATCATCAATCTCGTGGATATGTTCTTCGATATGACAAGACATGACGCAGTGAAGGCTCTAAACATTTATAAAAGAGCTGGTCAACAGGCTGAGAATCTTGCAGACTTCTATGAATATTGCAAGGGCTTGGAACTTGCCAGGAATTTCCAGTTTCCAACACTGAGACAGCCACCTCCCTCTTTCCTTGCAACTATGGAAGAATACATCAGAGAAGCACCTCAAACCGGATATGTTAACAAGAGATTGGAGTATCAAGAAAATGATGAATCACCTAAAGAAGATTCAGAATCCAATGAAACTGAAGAGCCTCAAGAAAATGAAGAACCTACTGAGGAAGTCAACGAGGAAGTCAATGAGGAAGAGCAGGTAGCAGAGGGGGAAGCACAGCCTAAGGAGGAAGAGGTTGAGCCTCCTCCTTTGATATCAACTGATGATGGTACAAATGATTTGTTGGGACTTAATGAAGCCAATCCAAGAGCTATGGAACTGGAGGAAAATAATGCTATGGCTCTTGCAATTGTACCACATGGTGGAAGTAATCCAAACAATCTTGCTTTGAGTAACATTGATGGGACTACTGGTTGGGAACTTTCGTTAGTTACAAATCCAAGTAACCATACTAGTCAAGCCACAGATCGCAAAATGGCCGGTGGTTTTGATAAGCTGTTATTGGACAGTCTGTATGAAGATGAAAATGCCAGGAGACAACTTCAACTCCAAAATGCAGGTTATGGACGTGGGGGAACCATGGAAATACATAACCCTTTTGATCAATGTAACCAACAACATGATCCATTTGCAATGTCCAACAACATAGCACCCCCACCAAATGTGCAAATGGCACTAATGGCTCAACAACAACAGCAGCAACAAATGATGTTCCAACAACAACAGATTCTGTACCAACAACCACAACTACACAACATGATGATGGTTCCTCAACAGCAGCAACAGCCTCATAACCAATACCCTCAACAGCAGATGCAGAGTTCTGGTTCTCATAATCCCTTTGGAGATCCCTTACCAGTACCAAACTACAATCAAAATTTCATACCCCCACAAGGAAATTACAATTTAATGTAG 1908 0.4182 MEMGNDHAFLFLDGFFLDSQPDALRSVLRVTRPECKPDPVNFPVQFGPRCYLNKSFRKAYGALKDSTKVGLAKVNSEYKELDIAIVKATNHVEYPPKERHIRKIFYATSAHQPRADVTYCIHKLSKRLSKTRSWIVAIKTLIVIHRTLREGDPTFREELLNYSRRGQILQISNFKDDSSPQAWDCSAWVRTYALFLEERLECFRVLKYDIESERLTKPSPTATKAHSRTRSLASEELLGQLPALQQLLYRLIGLQYALALVLKESFKIYCALNDGIINLVDMFFDMTRHDAVKALNIYKRAGQQAENLADFYEYCKGLELARNFQFPTLRQPPPSFLATMEEYIREAPQTGYVNKRLEYQENDESPKEDSESNETEEPQENEEPTEEVNEEVNEEEQVAEGEAQPKEEEVEPPPLISTDDGTNDLLGLNEANPRAMELEENNAMALAIVPHGGSNPNNLALSNIDGTTGWELSLVTNPSNHTSQATDRKMAGGFDKLLLDSLYEDENARRQLQLQNAGYGRGGTMEIHNPFDQCNQQHDPFAMSNNIAPPPNVQMALMAQQQQQQQMMFQQQQILYQQPQLHNMMMVPQQQQQPHNQYPQQQMQSSGSHNPFGDPLPVPNYNQNFIPPQGNYNLM 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02922 635 SUPERFAMILY ENTH/VHS domain 80 211 IPR008942 -
Spst9g02922 635 Gene3D ANTH domain 222 363 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Spst9g02922 635 MobiDBLite consensus disorder prediction 399 413 - -
Spst9g02922 635 FunFam Clathrin assembly protein AP180 55 210 - -
Spst9g02922 635 Pfam ANTH domain 80 346 IPR011417 GO:0005543
Spst9g02922 635 MobiDBLite consensus disorder prediction 364 398 - -
Spst9g02922 635 SUPERFAMILY GAT-like domain 227 346 - -
Spst9g02922 635 MobiDBLite consensus disorder prediction 588 617 - -
Spst9g02922 635 ProSiteProfiles ENTH domain profile. 73 210 IPR013809 -
Spst9g02922 635 CDD ANTH_N 81 203 - -
Spst9g02922 635 MobiDBLite consensus disorder prediction 359 428 - -
Spst9g02922 635 PANTHER CLATHRIN ASSEMBLY PROTEIN 57 567 IPR045192 GO:0048268|GO:0072583
Spst9g02922 635 MobiDBLite consensus disorder prediction 588 611 - -
Spst9g02922 635 Gene3D - 54 210 IPR008942 -
Spst9g02922 635 SMART enth_2 79 210 IPR013809 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02922 Spst-Chr9 63332498 63338626 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02922 K20044 - gmx:100783084 862.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02922 9 63332498 63338626 Spst9g02922 9 63332498 63338626 ECH
Spst3g03463 3 84399134 84407770 Spst9g02922 9 63332498 63338626 PCT