Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02917 ATGGCTACCGCCGAACCACTGCAGAACGGCACCGCCGGAAACCTGCTATCCCCGAACAATGTCTCTGCCTCACAATCACCGGCAGAGACGGAGGCTGACACCACCGCGGCGGCCCCTCTTCCAGAGAGGAGGTGGCCGGGGTGGCCCGGTGACTGCGTGTTCCGTCTCATCGTGCCCGTGGGGAAAGTTGGGAGCATCATAGGGCGCAAGGGAGAGCTGATAAAGAAGATGTGTGAAGAGACACGATCTCGCATTCGCGTTCTGGACGCTCCTCTCGGCACTCCTGATCGAATTGTACTTGTATCTGGGAAGGAAGAACAAGAGGCAGTTCTTTCCCCTGCAATGGATGCAGTGATAAGAATATTCAAGCGGGTCTCTGGATTATCTGAAACTGATGCTGAGAATAAAGAATCTGCTGCTGGTCTTGCATTTTGTTCCATCCGTTTATTGGTTGCATCGACACAGGCTATTAGTTTAATTGGAAAACAAGGCTCGTTAATCAAATCTATTCAGGAGAATACCAGTGCTTCTGTTAGAGTGCTGTCAGGAGATGAGGTGCAATTTTATTCAACTGCGGATGAAAGGATTGTGGAAATTCAGGGAGAAGCCTTGAAGGTCCTTAAAGCTCTGGAAGCAGTAGTAGGCCATCTGAGGAAATTTTTGGTTGATCATAGCGTTCTTCCCCTGTTTGAGAGAAATTTCAATGCACCAATCTCGCAAGACCGTCAAACAGAGACTTGGTCTGACAAGTCATTGCTGCATAGTACTTCACGTCCCAATGTATTTCCCGATATGCCTCTTTCAACGAAAAGGGAGTCTATCTTAGCTGAGCGTGAAAGTCAATTGGACTCATTATTCCCTTCCTCCACTATGTCTCTCTATGGGCAGGATTCTTCACTTTCTAGTGTTCGTTCTTCTGCTTTAGGCCGTCTTGGTGCACCTATTGTTACTACGGTAATACAAACAATGCAAATACCACTATCCTATGCGGAAGACATAATTGGTATTCAAGGGACTAATATTGATTACATTCGCCGCACTAGTGGTGCTGTATTGACTGTGCAAGAGAGCAGAGTGCCTGATGAAATCGTTGTAGAAATAAAAGGCACCTCATCTGAGGTTCAAACAGCACAACAGTTGATTCAGGATTTTATAAGCAGTCACAAAGAACCTGCCACTATCAGTTACGGCAGGCTAGATGCAGGTTCGAGATCTTCATACTCTCACTTGGGCACTTCATCACGCCTCCCATCTTCGTTGTCATCACAATCATACACAAGTTATGGAGGTTCTGGTCTTGGAGACTACAGTACTTTCAGGCTTTGA 1326 0.4683 MATAEPLQNGTAGNLLSPNNVSASQSPAETEADTTAAAPLPERRWPGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPLGTPDRIVLVSGKEEQEAVLSPAMDAVIRIFKRVSGLSETDAENKESAAGLAFCSIRLLVASTQAISLIGKQGSLIKSIQENTSASVRVLSGDEVQFYSTADERIVEIQGEALKVLKALEAVVGHLRKFLVDHSVLPLFERNFNAPISQDRQTETWSDKSLLHSTSRPNVFPDMPLSTKRESILAERESQLDSLFPSSTMSLYGQDSSLSSVRSSALGRLGAPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAVLTVQESRVPDEIVVEIKGTSSEVQTAQQLIQDFISSHKEPATISYGRLDAGSRSSYSHLGTSSRLPSSLSSQSYTSYGGSGLGDYSTFRL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02917 441 SMART kh_6 317 386 IPR004087 GO:0003676
Spst9g02917 441 SMART kh_6 50 123 IPR004087 GO:0003676
Spst9g02917 441 SMART kh_6 143 218 IPR004087 GO:0003676
Spst9g02917 441 MobiDBLite consensus disorder prediction 1 32 - -
Spst9g02917 441 Gene3D - 51 221 - -
Spst9g02917 441 ProSiteProfiles Type-1 KH domain profile. 144 213 - -
Spst9g02917 441 ProSiteProfiles Type-1 KH domain profile. 318 381 - -
Spst9g02917 441 Gene3D K Homology domain, type 1 316 390 IPR036612 GO:0003723
Spst9g02917 441 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 42 402 - -
Spst9g02917 441 MobiDBLite consensus disorder prediction 403 428 - -
Spst9g02917 441 MobiDBLite consensus disorder prediction 1 43 - -
Spst9g02917 441 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 42 107 IPR036612 GO:0003723
Spst9g02917 441 CDD KH-I_PEPPER_rpt1_like 51 119 - -
Spst9g02917 441 Pfam KH domain 54 107 IPR004088 GO:0003723
Spst9g02917 441 Pfam KH domain 321 383 IPR004088 GO:0003723
Spst9g02917 441 Pfam KH domain 147 213 IPR004088 GO:0003723
Spst9g02917 441 ProSiteProfiles Type-1 KH domain profile. 51 118 - -
Spst9g02917 441 CDD KH-I_PEPPER_rpt2_like 148 218 - -
Spst9g02917 441 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 314 388 IPR036612 GO:0003723
Spst9g02917 441 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 141 225 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02917 Spst-Chr9 63297025 63303262 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02917 K21444 - gmx:100815466 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02917 9 63297025 63303262 Spst9g02917 9 63297025 63303262 ECH
Spst3g03456 3 84360587 84365873 Spst9g02917 9 63297025 63303262 PCT