Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03456 ATGGCCACGCTCGACCCAATCCAAAACGGCACCACCAATCCCCTCCATTTGGATAATCCCGACGCCGCCGAATCGCCCACCACCACAGCCGACGACACTGCTCCCGAGGCTTCCGCTGAGAAGAGGTGGCCAGGATGGCCCGGCCTCTGCGTGTTCCGCCTCATCGTGCCGGTCCTCAAAGTGGGAAGCATCATTGGCCGCAAGGGCGAGCTCATCAAGAAGACCTGCGAGGAAACGAAAGCTCGCATTCGAGTCCTCGACGGCGCGGTTGGCACTCCCGATCGAATCGTACTCATATCAGGGAAGGAAGAGCCAGAGGCACCTCTTTCTCCAGCAATGGACGCTGTCATAAGGATTTTTAAACGTGTCTCAGGGTTGTCTGAAATTGATGGTGATAAAGTGGCAGGGGTTGCATTTTGTTCCGTTCGTTTATTGGTGGCCTCAACGCAGGCTATCAATTTGATTGGAAAGCAGGGTTCATTAATTAAATCTATACAGGAAAATACCAGTGCTTCGGTTAGAGTACTGTCTGGAGATGAGGTTCCCTTTTATGCTGCTGCGGATGAGAGGATTGTTGAGCTACAGGGAGAGGCCATGAAGGTCCTTAAGGCTCTGGAGGCAGTAGTTGGGCATCTGAGAAAGTTTTTGGTTGATCCTGGTGTTCTTCCCTTATTTGAGAAAAGTTACAATGCAACAATTTCCCAAGAGAGGCAAGTAGATAATACCTGGGTTGACAAACCATCACTGCATAGTGCTTCACAACCTAACATTGTAAATGATGTTCCTCTTTCATCAAAGAGGGATTCTCTCTTTGCTGATCGTGAAAGCCAGTTGGATTCATTGCTCCCTTCCTCCACAATGTCAATATATGGGCACGATTCTTCACTTTCTGGTCTTCGTTCTTCAGCACTCAGTCGAACCAGTGCTCCTATTGTTACCACGGTAATACAAACAATGCAAATACCACTATCCTATGCAGAGGACATCATTGGTATACAAGGGACTAATATTGACTACATTCGCCGCACCAGTGGAGCAATACTGACTGTGCAGGAGAGTCGGGTGCCTGATGAAATCATAGTGGAAATAAAAGGCACCTCATCTCAGGTTCAGACTGCACAACAGTTGATTCAGGAAGTTATAAGTAATCACAAAGAACCTGTTGCTAGTAATTACAGCAGCAGGTTAGATACAGGTCCGAGATCTTCTTACCCTCCGTTGGGCAGTTCATCTTATTCGTCATCTTCCTTTTCGTCACAACCCTACAGCGGGTACGGATCTTCTGGTCTAGGAGGCTACAGTACTTTCAGACTTTGA 1317 0.4799 MATLDPIQNGTTNPLHLDNPDAAESPTTTADDTAPEASAEKRWPGWPGLCVFRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGAVGTPDRIVLISGKEEPEAPLSPAMDAVIRIFKRVSGLSEIDGDKVAGVAFCSVRLLVASTQAINLIGKQGSLIKSIQENTSASVRVLSGDEVPFYAAADERIVELQGEAMKVLKALEAVVGHLRKFLVDPGVLPLFEKSYNATISQERQVDNTWVDKPSLHSASQPNIVNDVPLSSKRDSLFADRESQLDSLLPSSTMSIYGHDSSLSGLRSSALSRTSAPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQTAQQLIQEVISNHKEPVASNYSSRLDTGPRSSYPPLGSSSYSSSSFSSQPYSGYGSSGLGGYSTFRL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03456 438 ProSiteProfiles Type-1 KH domain profile. 49 116 - -
Spst3g03456 438 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 309 383 IPR036612 GO:0003723
Spst3g03456 438 ProSiteProfiles Type-1 KH domain profile. 139 208 - -
Spst3g03456 438 CDD KH-I_PEPPER_rpt2_like 141 213 - -
Spst3g03456 438 ProSiteProfiles Type-1 KH domain profile. 314 377 - -
Spst3g03456 438 Pfam KH domain 52 104 IPR004088 GO:0003723
Spst3g03456 438 Pfam KH domain 142 208 IPR004088 GO:0003723
Spst3g03456 438 Pfam KH domain 317 379 IPR004088 GO:0003723
Spst3g03456 438 MobiDBLite consensus disorder prediction 1 34 - -
Spst3g03456 438 Gene3D - 50 215 - -
Spst3g03456 438 MobiDBLite consensus disorder prediction 1 41 - -
Spst3g03456 438 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 43 104 IPR036612 GO:0003723
Spst3g03456 438 MobiDBLite consensus disorder prediction 388 426 - -
Spst3g03456 438 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 40 408 - -
Spst3g03456 438 CDD KH-I_PEPPER_rpt1_like 50 117 - -
Spst3g03456 438 SMART kh_6 138 213 IPR004087 GO:0003676
Spst3g03456 438 SMART kh_6 313 382 IPR004087 GO:0003676
Spst3g03456 438 SMART kh_6 48 121 IPR004087 GO:0003676
Spst3g03456 438 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 136 217 IPR036612 GO:0003723
Spst3g03456 438 Gene3D K Homology domain, type 1 312 387 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03456 Spst-Chr3 84360587 84365873 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03456 K21444 - gmx:100802089 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03456 3 84360587 84365873 Spst3g03456 3 84360587 84365873 ECH
Spst3g03456 3 84360587 84365873 Spst9g02917 9 63297025 63303262 PCT