LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst9g02911	ATGCGCTCAGGAGCTTGTACATTGCAACAGACCCTCACAGCGGAGGCTGCTTCAGTGTTGAAGCACTCTCTTGGGTTGGCACGCAGAAGGGGCCATGCACAGGTCACCCCTCTGCATGTGGCTGCAACTTTGCTGAGCCTAAGAGCCAGTTCTTTGAGAAGGGCTTGTCTCAAGTCTCAGCCACACCAAACATCACACCCTCTTCAGTGCAGAGCCCTTGAACTTTGCTTCAATGTGGCCCTCAACAGGCTCCCAACAACACCTGGCCCCTTGCTCCACACACAGCCTTCTCTCTCCAATGCTCTCATTGCTGCACTCAAGAGAGCACAGGCTCACCAGAGAAGAGGCTGCATTGAGCAGCAGCAGCAGCAGCCACTTCTCACCATCAAGGTGGAGCTTGAACAGCTCATTATATCTATCCTTGATGACCCTAGTGTTAGCAGGGTTATGAGAGAAGCTGGTTTCTCTAGCACTGCTGTTAAGAGCAACATAGAGGACACTTCTTCAACACCTTCTGTTTTCCAGTGTTACAACAGTTCTGGTGGTGTTTTCTCTTCTCCTTGTTCTCCTGCTCCCAGTGAGAACAACACTGCTAGTGCCTTCAGGCAGAACCATTTCTTGGCTGCTTACACTTCTCCTGAGTTCAGTACTCCACTTCTGTTCTCTCCACAGAAGAAGGCCTCGGTGTTTCCCATCACTGAGTCACCACCGCCCTCTTCCAGGGAGGATATCAAGGTGGTTCTTGATGTCCTCTTGAGAAAGAAGAAGAGGAACACTGTGATAGTTGGTGACTCAGTGGCACTCACTGAAGGCCTTGTGGGAGAGCTAATGGGGAAGTTGGAAAGAGGAGATGTGCCTGATGAGTTGAAGTCAACACATTTCATCAAGTTTCAGCTTGCACCAGTTTCTCTGAGGTTCATGAAAAGGGATGAAGTGGAGATGAGTCTCTCAGCACTGAAGAGGAAGGTGGATTCTGCTGAATCAGGAGGAGGAGCCATTTTCTATGTTGGAGACCTCAAGTGGACAGTGGAAGCAAGAACTTCTAGTGAAAAGGGTGAAGGAGAAGTTTGTGGCTATAACCCAGTTGATCATCTACTTGCGGAAATAGGGAAGTTATTTTGTGATTCCAACACTAAGGTGTGGCTTGTGGCCACAGCAAGTTATCAAACATACATGAGGTGCCAAATGAGGCAACCCTCTCTTGAGACTCAGTGGGCTCTTCAAGCTGTTCCTGTTCCATCAGGTGGACTTGGCTTGAGTCTCCATGCTTCCAGTGTTCACGATTCAAAGATGACAATCTCCCAGAACCCATCTCATATGCTGGAAACAAAGCTCTTCAGTAACAGCAAGGAGGAGCAGGATAAACTAAACTGCTGTGAGGAATGTGCCTCCAATTATGAAAAAGAAGCTCTGTTGTTCAAACCAGGCCAGAAGAAACTGTTGCCTTCCTGGCTTCAGTCTCATACCACCGAAGCTCATCAAAAGGATGAGTTGCTTCAGTTGAAAAGGAAATGGAACAGGCTATGCTACTGTCTGCACCAGAGCAAACAGTCTGAGAACCATTGGAGCAACACTTTACATGGCAATCAGAGTTCAAACGGGAAGATCTATCCTTACAATTCATCATACCCCTGGTGGCCGAACCAAGGCAGTGTCTTCACAGATTCAAGCTCAATATCTTTTGCTGATTCACCTGCAAAACCCGCTTTTAGCTCCAACATTGTCCCTCGGTTTCGGCGCCAACAGTCATGCACCATTGAGTTCAATTTCAGTGATGTGACTCAGAAAAAGCCATCCACAGTCTTGGATTCTCTCAAGGGCATGGAAGGTAATAATAATGAAGTAAAGGTTACTCTTGCTCTTGGAAATTCAACATTCGGTGGTTCAGGGCAAACGGTGGAAAATATCATAACTACTGATAGAACACTGCGACGAGCTCATATTTCTAAACTGTTGCAGGAGAATGTGCCATGGCAATCTGAGACAGTTCCTTCCATTGCCGAGGCCTTGGTTGATTCCAAATCTGCAAAGCAAAGTGCTACTACTTGGTTGTTGTTGCAAGGAACTGACTCTATAGGGAAAACAAGGTTGGCACGCGCGATTGCGGAATCAGTGTTTGGCTCAGTTGATGCGCTCCTTCACTTGGACATGCTGAAATATTCAGCGACCCCATTTTCTGAAATGGTGGCTGGAGCATTGAAAACCCATGTGAAGCTTGTGATTCTGATAGAAAATTTGGATTTTGCCGATGCCCAGTTCAGGAAGTTTCTTGCAGATGGGTTTGAAACTGGAAACTTTGGAGGTTTAAGTAGGACTGACGAGAGTTCAGGTCAAGCAATACTCGTATTGACCAATGGTGACACTAAGAACAATGAAGAACAGAACAATAAGGAGTCAGTGATGAAGTTGGTGTTGCAGATAAGTGAAACCAAGCCTGCTTTGGAGTCTTCATCACCTTGTTTGGGTCAGAAGAGAAGGGCTGAAGTTCTGGATTTGTTTTCCAAGGTTAAGAATCCAAGGGTGGATAAGAAGGAGGAGGGTAGCAAGGTGTTTTCAAGGCATTCAAGCTTCAACAATCTTGACCTGAACATGAAAGCTGATGAAGAGGATGATGCGGAAGAGAAAACAGGTGGAAACAGTCCAATTTCAAGTGATTTGACCAGGGAAACTATGGCAGATCCATTGGGCTGGAATGGGACTCTTGACTCAATTGAGAACAGGTTTGAGTTAAATGAAAGTCCAGAGAGGGAGAGGGAGGTGGGAGAGATGTTTCTGTCGAAGATGAAAGAATCTTTTGAGGAGGTTTATGGCAAAGAATGTGTGGTGAAGTTTACTGTAGAGGAGAGGGTGATAGAGGAAATTGGTGTGGGGTGTGCAAATTTTACTAACAGCATGTTTGAGAAATGGCTGAAAGACATTTTTCAAAGCAGTTTACAGACAGTTAACTTTGGTGGGGAGGAGGGGGGTATAGTTTTTACACTTTGTTGGGGTGGTAAAGGTGATAGGAAATGGGATAGTGGATTCATGGGTTCATGTTTGCCCAAGAATGTTCAAGTTAACTACTTCATGGATTGA	3075	0.4598	MRSGACTLQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRASSLRRACLKSQPHQTSHPLQCRALELCFNVALNRLPTTPGPLLHTQPSLSNALIAALKRAQAHQRRGCIEQQQQQPLLTIKVELEQLIISILDDPSVSRVMREAGFSSTAVKSNIEDTSSTPSVFQCYNSSGGVFSSPCSPAPSENNTASAFRQNHFLAAYTSPEFSTPLLFSPQKKASVFPITESPPPSSREDIKVVLDVLLRKKKRNTVIVGDSVALTEGLVGELMGKLERGDVPDELKSTHFIKFQLAPVSLRFMKRDEVEMSLSALKRKVDSAESGGGAIFYVGDLKWTVEARTSSEKGEGEVCGYNPVDHLLAEIGKLFCDSNTKVWLVATASYQTYMRCQMRQPSLETQWALQAVPVPSGGLGLSLHASSVHDSKMTISQNPSHMLETKLFSNSKEEQDKLNCCEECASNYEKEALLFKPGQKKLLPSWLQSHTTEAHQKDELLQLKRKWNRLCYCLHQSKQSENHWSNTLHGNQSSNGKIYPYNSSYPWWPNQGSVFTDSSSISFADSPAKPAFSSNIVPRFRRQQSCTIEFNFSDVTQKKPSTVLDSLKGMEGNNNEVKVTLALGNSTFGGSGQTVENIITTDRTLRRAHISKLLQENVPWQSETVPSIAEALVDSKSAKQSATTWLLLQGTDSIGKTRLARAIAESVFGSVDALLHLDMLKYSATPFSEMVAGALKTHVKLVILIENLDFADAQFRKFLADGFETGNFGGLSRTDESSGQAILVLTNGDTKNNEEQNNKESVMKLVLQISETKPALESSSPCLGQKRRAEVLDLFSKVKNPRVDKKEEGSKVFSRHSSFNNLDLNMKADEEDDAEEKTGGNSPISSDLTRETMADPLGWNGTLDSIENRFELNESPEREREVGEMFLSKMKESFEEVYGKECVVKFTVEERVIEEIGVGCANFTNSMFEKWLKDIFQSSLQTVNFGGEEGGIVFTLCWGGKGDRKWDSGFMGSCLPKNVQVNYFMD	1024

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst9g02911	1024	Pfam	Clp amino terminal domain, pathogenicity island component	26	46	IPR004176	-
	Spst9g02911	1024	Pfam	Clp amino terminal domain, pathogenicity island component	131	166	IPR004176	-
	Spst9g02911	1024	Gene3D	-	234	414	IPR027417	-
	Spst9g02911	1024	Gene3D	-	629	831	IPR027417	-
	Spst9g02911	1024	SUPERFAMILY	Double Clp-N motif	12	165	IPR036628	-
	Spst9g02911	1024	MobiDBLite	consensus disorder prediction	868	899	-	-
	Spst9g02911	1024	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	651	783	IPR027417	-
	Spst9g02911	1024	Gene3D	-	9	170	IPR036628	-
	Spst9g02911	1024	PANTHER	CHAPERONE PROTEIN CLPD, CHLOROPLASTIC	1	987	-	-
	Spst9g02911	1024	FunFam	protein SUPPRESSOR OF MAX2 1	9	170	-	-
	Spst9g02911	1024	ProSiteProfiles	Clp repeat (R) domain profile.	8	170	IPR004176	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst9g02911	Spst-Chr9	63208059	63212201	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst9g02911	-		-	gmx:102660146	1681

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst9g02911	9	63208059	63212201	Spst9g02911	9	63208059	63212201	ECH
	Spst3g03450	3	84316611	84320413	Spst9g02911	9	63208059	63212201	PCT