Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02865 ATGGCGTGGCTGCTTCGTAACGCTAACATTTCCCTCCTCAAACGTTCTTTCTTCCACTCCGACCTTCTTACGCGCTTTTGCTGCAAACCAGGACTATTGGGCACGTCTCAAGTTTTGAGCTTTTCAACTCGTAAAAGGAGGTCTAAGTCAGATGGAAGTGACTCAGGTGAAGAGAACATGTGTAAGAAAGATGTGGCCCTGCAACAAGCTATTGATCAGATCACTTCTGCATATGGCAAGGGATCTATCATGTGGCTTGGTCGTTCCGTGGCACCTAAAAATATTCCTGTGGTGTCCACTGGTTCTTTTGCTCTGGATATAGCACTTGGGGTTGGTGGTCTTCCAAAGGGGCGTGTTGTGGAAATATTTGGTCCAGAGGCTTCCGGGAAAACAACGCTTGCTTTGCATGTGATTGCAGAAGCACAAAAGCTAGGAGGCTACTGTGCATTTGTTGATGCTGAGCATGCACTTGATAAGACACTTGCAGAGTCAATTGGTGTAAATACTAAAAACTTGCTTCTCTCACAACCAGATTGTGGTGAACAAGCACTTGGCCTTGTTGATACCTTAATACGGAGTGGTTCCGTTGATGTAATTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCTCTTCGGAAATTGTGTCACTCCTTGTCACTTTCCCAGTGTATATTGGTTTTTATAAACCAGGTGAGGTCGAAGATATCTACTTTCGGGGGATTTGGTGGTCCTACTGAAGTTACTTGTGGTGGTAATGCACTGAAGTTCTATGCTTCTGTGCGGCTAAATATCAAAAGAATTGGGTTTGTCAAGAAGGGTGAAGAGACTTTAGGTAGCCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCATGCTCCTCCATTTAAAACTGCACAGTTTGAGCTTGAGTTTGGCAAGGGTATAAGTAGAGAAGCAGAGGTTATAGAGTTGAGCATAAAATACAAACTCGTAAAGAAGAGTGGTTCCTTTTATGAATATAACGGCCAGAATTTCCATGGCAAGGATGCTTTAAAGAGGTTCCTGGCAGACAGTGATGGTATACAAGAATTAGCATCAAAACTCAGGGAGAAGATTCTTAATACGGAGCCGGAACTGGACCCAGAGGAGGAGGCTATGATTGGAGATCTTATGGAACAAATGGAAGAAATGGTATCAGTTGATTCCACTGACGAAACTGCTGTCGCTGCTGTTGAAGCATAA 1284 0.4439 MAWLLRNANISLLKRSFFHSDLLTRFCCKPGLLGTSQVLSFSTRKRRSKSDGSDSGEENMCKKDVALQQAIDQITSAYGKGSIMWLGRSVAPKNIPVVSTGSFALDIALGVGGLPKGRVVEIFGPEASGKTTLALHVIAEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDCGEQALGLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILVFINQVRSKISTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEETLGSQVLVKVVKNKHAPPFKTAQFELEFGKGISREAEVIELSIKYKLVKKSGSFYEYNGQNFHGKDALKRFLADSDGIQELASKLREKILNTEPELDPEEEAMIGDLMEQMEEMVSVDSTDETAVAAVEA 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02865 427 CDD RecA 94 331 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst9g02865 427 FunFam Recombinase RecA 92 390 - -
Spst9g02865 427 ProSiteProfiles RecA family profile 2. 263 334 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Spst9g02865 427 SUPERFAMILY RecA protein, C-terminal domain 330 383 IPR023400 -
Spst9g02865 427 Pfam recA bacterial DNA recombination protein 66 330 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst9g02865 427 ProSitePatterns recA signature. 275 283 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Spst9g02865 427 PANTHER RECA 43 396 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst9g02865 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 329 IPR027417 -
Spst9g02865 427 PRINTS RecA protein signature 358 375 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst9g02865 427 PRINTS RecA protein signature 224 253 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst9g02865 427 PRINTS RecA protein signature 152 181 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst9g02865 427 PRINTS RecA protein signature 305 334 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst9g02865 427 PRINTS RecA protein signature 186 215 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst9g02865 427 PRINTS RecA protein signature 272 300 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst9g02865 427 Hamap Protein RecA [recA]. 63 390 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst9g02865 427 Gene3D - 93 389 IPR027417 -
Spst9g02865 427 SMART AAA_5 116 290 IPR003593 GO:0016887
Spst9g02865 427 NCBIfam recombinase RecA 63 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst9g02865 427 ProSiteProfiles RecA family profile 1. 94 253 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02865 Spst-Chr9 62824736 62829751 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02865 K03553 - gmx:100798983 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02865 9 62824736 62829751 Spst9g02865 9 62824736 62829751 ECH
Spst3g03399 3 83743968 83752283 Spst9g02865 9 62824736 62829751 PCT