Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03399 ATGGCGAGGCTGCTTCGTAACACTACCCTTCTGACACGCTCTCTATTCGTCCCTAAGATAGGGAAAAGGAAAAAAGCCAATGACCGTTTTGTCTGTGATGGCCATGGATACGAGAAACCGTTTCCCTCGCTTTTTGCATCTTCTGCCAATGTTTCTGATGGATGCTTATTTTGCTGCATAATCAGTTCCTGCTTTCGTTTGCAGGGCTTTGAACTGGGACTATTTGGCAGTGCTCAGATTTTGAGCTTTTCATCTAAAGTACCAGGACAGGATGGGAAAATCAGCATGGAACAGCTGTGTAACCTTGTGGTTATGTGGCTAGATGGGAAGATTTATAGTAGAAGGCGCTCCAAATCTGATGGAAGTGACTCTGGTGAGGAAAACGTGTGTAAGAAAGAGTTGGCCCTTCAACAAGCACTTGATCAGATCACTTCTGCATTTGGAAAGGGATCCATCATGTGGCTTGGTCGTACTGTCGCACCAAAAAATGTACCTGTTGTGTCTACAGGTTCTTTTGCTCTTGATATAGCACTAGGAATTGGTGGTCTTCCAAAGGGACGGGTTGTGGAAATATATGGTCCAGAGGCTTCTGGAAAAACGACTCTTGCTTTACATGTGATTGCAGAGGCACAGAAGCAAGGAGGTTATTGTGTCTTTGTTGATGCTGAGCATGCCCTTGATAAGACACTTGCAGAGTCTATTGGTGTGAATACGGCGAACTTGCTTCTCTCCCAACCAGATTGTGGTGAACAAGCACTTAGTCTTGTGGATACCTTAATCCGAAGTGGTTCAGTTGATGTTATTGTTGTTGACAGTGATTATATGTTTTTTCCTGATAAGGTGGCTGCGCTTGTTCCTAAAGGTGAGCTTGATGGTGAAATGGGCGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGTCAGGCACTTCGAAAATTGAGCCATGCAATGAATAGTAAATTCCTGTCACGATCATGTCTCTTTGAGCTTGATACCCCTGGAATATACACAAATTTGTTGCCCCCCCCCCCCAACTTGAGCAAGTTAGTATATATGTATGTGAGGTCAAAGATTTCAACTTTTGGGGGATTTAGTGGGCCTACGGAAGTTACTTGTGGTGGTAATGCATTGAAATTCTATGCTTCTGTGCGTCTAAATATCAAGAGAATAGGGTTTGTCAAGAAGGGTGAAGAGATTTTAGGAAGCCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCTAGCCCCTCCATTTAAAACTGCTGAGTTTGAGCTTCAATTTGGTAAGGGGATATGTAAAGAAACAGAGATTATAGATTTAAGTGTAAAGCACAAACTCATCTTAAAGGCTGGTGCAATGTATTACTATAACGAACATAATTTCCGCGGTAAGGATGCGCTAAAGAGTTTCCTAGCTGAGAATCATAGTGCAATAGAAGAACTTGAAACGAAGCTCAGAGAGAAGGTTCTTAATGTTGAGACAGAACATACACAAGAATCAGATGTTATTAAGGAAGATGTTACAGAAGAAATTGCAACAGTTAATTCTACTGACGAAGAAACAGCTATTATAGAAGCATGA 1578 0.4227 MARLLRNTTLLTRSLFVPKIGKRKKANDRFVCDGHGYEKPFPSLFASSANVSDGCLFCCIISSCFRLQGFELGLFGSAQILSFSSKVPGQDGKISMEQLCNLVVMWLDGKIYSRRRSKSDGSDSGEENVCKKELALQQALDQITSAFGKGSIMWLGRTVAPKNVPVVSTGSFALDIALGIGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKTLAESIGVNTANLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSDYMFFPDKVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHAMNSKFLSRSCLFELDTPGIYTNLLPPPPNLSKLVYMYVRSKISTFGGFSGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEEILGSQVLVKVVKNKLAPPFKTAEFELQFGKGICKETEIIDLSVKHKLILKAGAMYYYNEHNFRGKDALKSFLAENHSAIEELETKLREKVLNVETEHTQESDVIKEDVTEEIATVNSTDEETAIIEA 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03399 525 PANTHER RECA 113 499 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst3g03399 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 430 IPR027417 -
Spst3g03399 525 SUPERFAMILY RecA protein, C-terminal domain 433 487 IPR023400 -
Spst3g03399 525 PRINTS RecA protein signature 221 250 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst3g03399 525 PRINTS RecA protein signature 373 401 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst3g03399 525 PRINTS RecA protein signature 406 435 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst3g03399 525 PRINTS RecA protein signature 459 476 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst3g03399 525 PRINTS RecA protein signature 255 284 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst3g03399 525 ProSiteProfiles RecA family profile 1. 163 332 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Spst3g03399 525 Pfam recA bacterial DNA recombination protein 354 430 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst3g03399 525 Pfam recA bacterial DNA recombination protein 135 318 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst3g03399 525 ProSitePatterns recA signature. 376 384 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Spst3g03399 525 CDD RecA 163 432 IPR013765 GO:0003697|GO:0005524|GO:0006281
Spst3g03399 525 Gene3D - 162 498 IPR027417 -
Spst3g03399 525 ProSiteProfiles RecA family profile 2. 362 435 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03399 Spst-Chr3 83743968 83752283 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03399 K03553 - gmx:100781271 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03399 3 83743968 83752283 Spst3g03399 3 83743968 83752283 ECH
Spst3g03399 3 83743968 83752283 Spst9g02865 9 62824736 62829751 PCT