Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02825 ATGAAGGTGATTCTAACCATCTTCTTCATTTTATCCCTCCTCTCTCTCTCCCACGCTTCTGTGGTAGATTTCTGTGTGGCAGATTACACAGCTCCCAATGGCCCTGCAGGGTACTCATGCAAGAAGCCTGCAAAGGTAACAGTGGATGACTTTGTCTACTCTGGCCTTGGCACTGCTGGCAACACCTCAAACATCATCAAAGCTGCAGTGACTCCAGCATTTGATGCCCAATACCCTGGTGTCAATGGACTTGGCATTTCCGTTGCACGTTTGGACTTGGCATCTGGTGGGGTTATCCCACTCCACACGCACCCTGGAGCCTCAGAACTTTTGGTTGTGGTGGAGGGTCAAATCTGTGCTGGATTTGTTGATTCCGGCAACAACGTGTATCTCAAAACCCTAGAAAAAGGTGATGTCATGGTGTTCCCTCAGGGCTTGTTGCACTTCCAAATCAACTCTGGTAAGTCTCCGGCTTTGGCTTTTGTGAGTTTCAGCAGTGCCAACCCTGGCCTCCAGATTCTCGACTTTGCTTTGTTCAAGAGTGACTTCCCCACTGAACTCATCACCCAAACCACTTTCATTGACGCTGCAGTGGTCAAGAAGCTGAAGAGTGTTCTTGGAGGGTCAGGTTAA 633 0.4913 MKVILTIFFILSLLSLSHASVVDFCVADYTAPNGPAGYSCKKPAKVTVDDFVYSGLGTAGNTSNIIKAAVTPAFDAQYPGVNGLGISVARLDLASGGVIPLHTHPGASELLVVVEGQICAGFVDSGNNVYLKTLEKGDVMVFPQGLLHFQINSGKSPALAFVSFSSANPGLQILDFALFKSDFPTELITQTTFIDAAVVKKLKSVLGGSG 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02825 210 SMART Cupin_1_3 54 200 IPR006045 -
Spst9g02825 210 Gene3D Jelly Rolls 18 209 IPR014710 -
Spst9g02825 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 17 204 - -
Spst9g02825 210 SUPERFAMILY RmlC-like cupins 20 204 IPR011051 -
Spst9g02825 210 Pfam Cupin 55 198 IPR006045 -
Spst9g02825 210 CDD cupin_OxOx 18 206 IPR001929 GO:0030145
Spst9g02825 210 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Spst9g02825 210 PRINTS Germin signature 132 152 IPR001929 GO:0030145
Spst9g02825 210 PRINTS Germin signature 165 180 IPR001929 GO:0030145
Spst9g02825 210 ProSitePatterns Germin family signature. 97 110 IPR019780 GO:0030145
Spst9g02825 210 FunFam Auxin-binding protein ABP19a 18 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02825 Spst-Chr9 62487249 62487881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02825 1 209 Miscellaneous Gene Families AT5G20630 70.476 1.56e-106 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02825 - - gmx:100806553 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02749 3 77058120 77058746 Spst9g02825 9 62487249 62487881 PCT