Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02749 ATGATTCTCATTATCTCCCTCGTTTTTTCTCTTTTCTCCTTCTCCCATGCTTCTGTCCTGGATTTCTGTGTGGCAGATCATGCAGGTCCTATTGGCCCTGCAGGATACTCCTGCAAGAAGCCTTCGAAGGTCACAGCAGATGATTTTGCTTTCAGTGGCCTTGGCATTGCTGGTAACACCTCTAACATTATCAAAGCTGCAGTGACCCCCGCATTTGATGCTCAGTTTCCTGGTGTCAATGGCCTTGGCATATCCGCAGCCCGTCTGGACTTAGCAGCAGGGGGAGTTATACCACTGCACACTCATCCTGGAGCTTCAGAACTACTTGTTGTAGTACAAGGGAGCATCTTGGCAGGATTCATTTCATCTGACAACACTGTCTACCTCAAAAATCTTAAGAAGGGGGATGTTATGGTATTCCCTCAAGGCTTGTTGCACTTCCAAATCAATGCAGGTGGTTCGTCAGCCCTGGCTATTGTAAGCTTCAGTAGCTCCAATCCTGGTCTGCAAATTCTGGACTTTGCTTTGTTCAAGAGTAATTTCCCCACACCATTGATAGTGCAAACCACTTTCCTTGATGCTGCTCTGGTGAAGAAGCTTAAGGGTGTTCTTGGAGGTTCAGGCTAA 627 0.4705 MILIISLVFSLFSFSHASVLDFCVADHAGPIGPAGYSCKKPSKVTADDFAFSGLGIAGNTSNIIKAAVTPAFDAQFPGVNGLGISAARLDLAAGGVIPLHTHPGASELLVVVQGSILAGFISSDNTVYLKNLKKGDVMVFPQGLLHFQINAGGSSALAIVSFSSSNPGLQILDFALFKSNFPTPLIVQTTFLDAALVKKLKGVLGGSG 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02749 208 CDD cupin_OxOx 15 204 IPR001929 GO:0030145
Spst3g02749 208 PRINTS Germin signature 100 120 IPR001929 GO:0030145
Spst3g02749 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Spst3g02749 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Spst3g02749 208 SUPERFAMILY RmlC-like cupins 19 202 IPR011051 -
Spst3g02749 208 Gene3D Jelly Rolls 16 207 IPR014710 -
Spst3g02749 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 13 199 - -
Spst3g02749 208 ProSitePatterns Germin family signature. 95 108 IPR019780 GO:0030145
Spst3g02749 208 Pfam Cupin 55 182 IPR006045 -
Spst3g02749 208 SMART Cupin_1_3 52 198 IPR006045 -
Spst3g02749 208 FunFam Auxin-binding protein ABP19a 16 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02749 Spst-Chr3 77058120 77058746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02749 1 207 Miscellaneous Gene Families AT5G20630 68.750 1.80e-96 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02749 - - gmx:100800387 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02749 3 77058120 77058746 Spst9g02825 9 62487249 62487881 PCT