Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02805 ATGGTAGAGAATTCAGGGGTACTCGGGTGGTTCCTCCTCAGCCCCAAAACGGCACCTTTCGCTTCTCACAAGACCCTCTTCGCGTTCCTCTGGGCGGCGGCGCTGACCTCGCTTTTCGTGTGGCAGAGGAACACGATCAGCGGGTTTCTGGTGCTGGGCGGTGTTCAGGTGCGGCCGCCGCCGAAGCTGCGGCCGGTGGTTTTCTCTTTGACGGAGTTTGGTGGGGTTGGTGACGGCGTTACTCTCAACACTGAGGCGTTTGAGAGAGGCGTTAGGGCCATTTCCAAGTTCGGGAATAAGGGTGGTGGCCAACTCAATGTGCCACCTGGACGTTGGCTCACTGCACCCTTCAACCTCACCAGTCACATGACTCTTTTTCTTGCTCGTGATGCTGTTATACTCGCAATTCAGGACGAAAAGTATTGGCCACTGATGCCTGCATTACCTTCGTATGGTTATGGAAGGGAGCATCCTGGGCCTCGATATACCAGTTTGATCCATGGTCAAAATCTTATAGATGTTGTCATAACAGGGCATAATGGTACCATCAATGGACAGGGACAAACATGGTGGACAAAATATCGTCAGAAGCTTCTGAACCACACCAGGGGGCCACTTGTTCAGATATTATGGTCTAGTAACATTGTGATCTCAAATATTACTTTGCGTGACTCTCCTTTTTGGACACTTCATCCATATGACTGCAAAAATGTTACAGTAAAAAATGTTACTATATTGGCTCCTGTATATCGCGCTCCAAACACTGATGGCATAGATCCTGATTCTTGTGAGGATATGTTGATAGAGGACTGTTACATAAGTGTGGGGGATGATGCAATTGCAATAAAAAGTGGTTGGGATCAATATGGAATTACTTATGGAAGGCCTTCAAAGAATATAGTGCTCCGAAACCTTGTTGTTCGCTCTAATGTCAGTGCTGGCATCTCGATAGGCAGTGAGATGTCTGGTGGGGTATCCAACGTCCTGGTGGAGAACATTCTGGTATGGGAATCAAGGCGTGCCATGAGAATCAAGACTGCACCAGGAAGAGGTGGATATGTGCGCCAAATAACATACAGGAACCTAGTGTTCAAAAACGTGCGTGTTGGAATTGTGATCAAGACAGATTACAACGAACACCCTGGTGCTGGATACGATCCTAAAGCATTTCCAATACTCAGAGACATAAGCTTCATCAATATCCGTGGCCAAGGAGTACGTGTGCCTGTTCGAATTCAAGGCAGTGAACAGATTCCAATAAGAAATGTGACATTCCGTGGCATGAAGGTTGGCACAACCTACAAGAAGAAGCATATCTTCCAGTGTGCCTTTGTCCAAGGTCAGGTAATAGGGACCATCTCTCCTGCTCCATGTGACAGCTTTGATAGGTACGATGAACAAGGGCAGCTTGTAAAGCATGCTGCTTCACAGAATGTGACAGATATAGATTATGAAATTTGA 1461 0.4716 MVENSGVLGWFLLSPKTAPFASHKTLFAFLWAAALTSLFVWQRNTISGFLVLGGVQVRPPPKLRPVVFSLTEFGGVGDGVTLNTEAFERGVRAISKFGNKGGGQLNVPPGRWLTAPFNLTSHMTLFLARDAVILAIQDEKYWPLMPALPSYGYGREHPGPRYTSLIHGQNLIDVVITGHNGTINGQGQTWWTKYRQKLLNHTRGPLVQILWSSNIVISNITLRDSPFWTLHPYDCKNVTVKNVTILAPVYRAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGITYGRPSKNIVLRNLVVRSNVSAGISIGSEMSGGVSNVLVENILVWESRRAMRIKTAPGRGGYVRQITYRNLVFKNVRVGIVIKTDYNEHPGAGYDPKAFPILRDISFINIRGQGVRVPVRIQGSEQIPIRNVTFRGMKVGTTYKKKHIFQCAFVQGQVIGTISPAPCDSFDRYDEQGQLVKHAASQNVTDIDYEI 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02805 486 PANTHER PECTIN LYASE-RELATED 43 469 - -
Spst9g02805 486 SUPERFAMILY Pectin lyase-like 57 459 IPR011050 -
Spst9g02805 486 Pfam Glycosyl hydrolases family 28 163 445 IPR000743 GO:0004650|GO:0005975
Spst9g02805 486 SMART pbh1 263 284 IPR006626 -
Spst9g02805 486 SMART pbh1 235 262 IPR006626 -
Spst9g02805 486 SMART pbh1 297 319 IPR006626 -
Spst9g02805 486 SMART pbh1 354 375 IPR006626 -
Spst9g02805 486 SMART pbh1 388 410 IPR006626 -
Spst9g02805 486 SMART pbh1 325 346 IPR006626 -
Spst9g02805 486 Gene3D - 55 450 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02805 Spst-Chr9 62295419 62298933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02805 20 486 Glycoside Hydrolase AT3G42950 72.314 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02805 - - gmx:100791187 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02805 9 62295419 62298933 Spst9g02805 9 62295419 62298933 ECH
Spst3g02779 3 77348266 77353381 Spst9g02805 9 62295419 62298933 PCT