Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02779 ATGGTGGAGACCTCCACGCTAGGGCGCTTCCACCACCAAAGGTTCGACCTTCGCCGCTGGCTCCCCGCCTTCCTCACCTCCCACAAGACCCTCTTCACCGTCCTCTGGATCGGCGTCTTCGCCTCCCTTTTCCTCTGGCAGAGGAACATTGTCGGCAGCTTCCTCATCTTCGGCGCTCCTCCGGCCAGGCCCATGCCCAAGCTCCGCCCCGCCGCCTTCAATTTGACGGATTTCGGAGGTGTAGGTGACGGCATCACTCTCAACACCGAGGCCTTCGAGAGGGCCGTTTCGGCGATTTCGAAGTTTGGCATGAAAGGCGGTGCGCAGTTAAACGTCCCTCCCGGACGCTGGCTTACGGCGCCGTTTAATCTCACCAGCCACATGACTCTGTTTCTAGCTCAAGATGCTGTTATTCTCGGCATTGATGTCAAAGCTAAAAAAATGATGTATTGTGAGGGTGGAACTGCTGTGTCAATTATAGCTTTTTTCAAGGCTAGGTGGTCGTTGTTTGACACTTTGGCTATTGTGACTGCAGTTGGAAAAAATGGTAGAATTTCACGTTCAGATGGTTTAAGCACATTTTGGAGAAGACTTGAAGAAGCACCAGTGAGGAACATTTACCATAAAGAAGATAGTTCAATGGTTAGATATGGTGGGGGAACTAGGAAAACTATAGGCCAAATCATTAAGAGAGATTTAGAGGTCTACACTGTGTACTTGGCATTGAGTGGTAGAATTTGGACAGTTGAACTGAATATCTATGATCCAGTTAATTATCACCGGTTTATGTATTCTGCTGAGAGGAGTGATGAAACATATTGGCCATTGATGGCTCCATTGCCTTCATATGGTTATGGGAGGGAGCATCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAAAATCTTAAAGATGTTGTGATAACAGGGCATAATGGTACCATAAATGGTCAAGGACAAGCATGGTGGAAAAAATATCGCCAGAAGCGACTCAACCACACTAGGGGGCCACTTGTTCAGATCATGTGGTCTAGTGACATTGTGATCACTAATATTACTTTGCGTGACTCTCCTTTCTGGACACTTCATCCATATGACTGCAAAAACATTACAATAAAAGGTGTAACTATATTGGCTCCTGTGCTTGAAGCTCCAAACACTGATGGCATAGATCCTGACTCTTGTGAGGACATGTTGATAGAGGACTGTTACATAAGTGTGGGAGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAGTATGGAATTTCATATGGAAGGCCTTCCATGAATATAATGATCCGAAACCTTGTTGTTCGCTCTTTGGTCAGTGCTGGCATCTCAATTGGCAGTGAGATGTCTGGCGGGGTATCCAACATCACAGTGGAGAATCTTCTTGTATGGAATTCTAGGCGTGGTGTGAGGATCAAGACCGCCCCTGGACGAGGAGGATATGTGCGCCATATAACTTATAGGAATCTAACATTTCAGAATGTCCGTGTTGGAATTGTGATGAAGACAGATTACAATGAACACCCTGATGATGGGTATGACCCTACGGCACTCCCAATTCTCAGAGACATAAGCTTTACCACAATCCATGGCCAAGGGGTTCGTGTGCCAGTACGTATACACGGTAGTGAAGAAATTCCTGTGAAAAATGTGACCTTTCGAGACATGTCAGTTGGTCTAACCTACAAGAAGAAGCATATCTTTCAGTGTGCCTTTGTTGGAGGCCGTGTAATAGGAACCATATTTCCTGCTCCCTGTGAAAACCTTGATCTGTACAATGAGCATGGACAGCTGGTTAAGCGTTCTGCGTCCCAGAATGTGACAGATATAGATTATGATTTTTGA 1857 0.461 MVETSTLGRFHHQRFDLRRWLPAFLTSHKTLFTVLWIGVFASLFLWQRNIVGSFLIFGAPPARPMPKLRPAAFNLTDFGGVGDGITLNTEAFERAVSAISKFGMKGGAQLNVPPGRWLTAPFNLTSHMTLFLAQDAVILGIDVKAKKMMYCEGGTAVSIIAFFKARWSLFDTLAIVTAVGKNGRISRSDGLSTFWRRLEEAPVRNIYHKEDSSMVRYGGGTRKTIGQIIKRDLEVYTVYLALSGRIWTVELNIYDPVNYHRFMYSAERSDETYWPLMAPLPSYGYGREHPGPRYGSLIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKRLNHTRGPLVQIMWSSDIVITNITLRDSPFWTLHPYDCKNITIKGVTILAPVLEAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGISYGRPSMNIMIRNLVVRSLVSAGISIGSEMSGGVSNITVENLLVWNSRRGVRIKTAPGRGGYVRHITYRNLTFQNVRVGIVMKTDYNEHPDDGYDPTALPILRDISFTTIHGQGVRVPVRIHGSEEIPVKNVTFRDMSVGLTYKKKHIFQCAFVGGRVIGTIFPAPCENLDLYNEHGQLVKRSASQNVTDIDYDF 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02779 618 SUPERFAMILY Pectin lyase-like 61 591 IPR011050 -
Spst3g02779 618 PANTHER PECTIN LYASE-RELATED 64 603 - -
Spst3g02779 618 Gene3D - 247 577 IPR012334 -
Spst3g02779 618 Gene3D - 62 230 IPR012334 -
Spst3g02779 618 SMART pbh1 367 394 IPR006626 -
Spst3g02779 618 SMART pbh1 395 416 IPR006626 -
Spst3g02779 618 SMART pbh1 457 478 IPR006626 -
Spst3g02779 618 SMART pbh1 486 507 IPR006626 -
Spst3g02779 618 SMART pbh1 547 568 IPR006626 -
Spst3g02779 618 SMART pbh1 429 451 IPR006626 -
Spst3g02779 618 Pfam Glycosyl hydrolases family 28 295 574 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02779 Spst-Chr3 77348266 77353381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02779 244 617 Glycoside Hydrolase AT1G19170 76.579 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02779 - - gmx:100818529 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02779 3 77348266 77353381 Spst3g02779 3 77348266 77353381 ECH
Spst3g02779 3 77348266 77353381 Spst9g02805 9 62295419 62298933 PCT