Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02746 ATGTTGCTCTCTCTTTCTTCTTCCATTCTTCCATCTCCCATTCCCCATACCAAATTTCCCACAACCCAAGGCCAGTTTTCTAGGGTCACCCGCTTCTCAGTTTCAGCTCCATCAAAAATCACTGTCTCTGCCTCTTCTACCCGAAGACCAGCTCCAACACCCAAAACCAGAAACCCAAAAGATAAGGAATTTTCCCAGACACTGTTCTTCGAGGTTACGGAGAAGAAACCCATCAAGAAGAAGAAAAGGAAGGAGAAAACGAAGAATGGTAAGATCTGGGTTCACACTCTCCCTGAAGTCTTATCCTATCACATTCACAAGAAGGACTGGATTATTGTCCTTGAGTTATTTGACATGCTTAAAGGCCAACCCTATTACCAACCCAGAAAAGATACTTACATGAAACTCATTGTGTTGCTCGGAAAATCCGGCCAACCCCATCGTGCCCATCAGCTTTTTAACTCTATACACGAAGATGGTTGTGAAAGTACTGAACTTTACACCGCCTTAATTGCAGCGTATTGTCAAAATAATTTGGTTGATGAGGCATTGTTGATTCTTGATGAGATGATGAAAATCCCCCATTGCCAGCCTGATATTTTAACTTACAGTACCTTGATGGAAGCTCTTGTCGGTGCTTTGAAGTTTGAAATGGTTGTGTTGGTGTATGATAAAATGGTTGAAAGGTCTATCATACCAAACACTCTCACCCAGAATCTCCTTCTGACTGGTTATGGTAAGGACGGGAAGTTTGATCAGATGGAGAAAGTAGTGTCAAGTATGATGGAGAGCACTACTTGCAAGCCTGATGTCTGGACAATGAACGCAGTGATCAGTGTCTTTCGTGATAAGGGTCAGATTGATATGATGGAGAAATGGTACGAGAAATTTTGTAGTTTTGGGATACAACCACAAAGGAGCACTTTTAATATTTTAATGGGAGCTTATTGTAAAAAAAGAATGTATGACAAAATGTCATCAGTTATGCAGTGTATGCGCAAGGAAAAATGTCCATGGACAACCCCAACTTATAACTTCGTGATTGAGGCATTTGCAGCAGTAGGTGATGCTGCAAACATGGAACGTGCATTTGATCAAATGGTTGCTGAGGGTTTGACAGCAGATACTAAGACTTTCTGCTGCCTTATCAATGGCTATGCTAATGCTGGTATCTTCTATAAAGTAATTAGCAGTGTTAGTTTGGCTGAGAAGTTTCAGATACATATGAATACTTCATTTTACAATGCAGTCATATCCGCCTGTGCCAATGAGGATTCTTTGATTGAAATGGAAAGATTTTTCGAGCGTATGAAAGAAAAAGAATGTCAACCAGATAACACAACATACTCTGTCATGATTGAGGCATACAGAAAAGCAAGTATGAACGACAAAATATACTATTTGATGCAGGAAAAACAGATGATGTTATCTGATGACAAAAACTTGAATGAGCCTCAGGAGACAATCTTTGGTTGA 1476 0.4018 MLLSLSSSILPSPIPHTKFPTTQGQFSRVTRFSVSAPSKITVSASSTRRPAPTPKTRNPKDKEFSQTLFFEVTEKKPIKKKKRKEKTKNGKIWVHTLPEVLSYHIHKKDWIIVLELFDMLKGQPYYQPRKDTYMKLIVLLGKSGQPHRAHQLFNSIHEDGCESTELYTALIAAYCQNNLVDEALLILDEMMKIPHCQPDILTYSTLMEALVGALKFEMVVLVYDKMVERSIIPNTLTQNLLLTGYGKDGKFDQMEKVVSSMMESTTCKPDVWTMNAVISVFRDKGQIDMMEKWYEKFCSFGIQPQRSTFNILMGAYCKKRMYDKMSSVMQCMRKEKCPWTTPTYNFVIEAFAAVGDAANMERAFDQMVAEGLTADTKTFCCLINGYANAGIFYKVISSVSLAEKFQIHMNTSFYNAVISACANEDSLIEMERFFERMKEKECQPDNTTYSVMIEAYRKASMNDKIYYLMQEKQMMLSDDKNLNEPQETIFG 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02746 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Spst9g02746 491 Pfam PPR repeat 343 372 IPR002885 -
Spst9g02746 491 Pfam PPR repeat 239 263 IPR002885 -
Spst9g02746 491 Pfam PPR repeat 132 161 IPR002885 -
Spst9g02746 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Spst9g02746 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Spst9g02746 491 Gene3D Tetratricopeptide repeat domain 263 329 IPR011990 GO:0005515
Spst9g02746 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Spst9g02746 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Spst9g02746 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 198 IPR002885 -
Spst9g02746 491 PANTHER EXPRESSED PROTEIN 25 471 IPR044179 GO:0003729
Spst9g02746 491 Gene3D Tetratricopeptide repeat domain 330 487 IPR011990 GO:0005515
Spst9g02746 491 NCBIfam pentatricopeptide repeat 414 445 IPR002885 -
Spst9g02746 491 NCBIfam pentatricopeptide repeat 166 192 IPR002885 -
Spst9g02746 491 NCBIfam pentatricopeptide repeat 202 235 IPR002885 -
Spst9g02746 491 NCBIfam pentatricopeptide repeat 237 271 IPR002885 -
Spst9g02746 491 NCBIfam pentatricopeptide repeat 308 340 IPR002885 -
Spst9g02746 491 NCBIfam pentatricopeptide repeat 132 163 IPR002885 -
Spst9g02746 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 269 IPR002885 -
Spst9g02746 491 Pfam PPR repeat family 166 210 IPR002885 -
Spst9g02746 491 Pfam PPR repeat family 410 456 IPR002885 -
Spst9g02746 491 Pfam PPR repeat family 269 318 IPR002885 -
Spst9g02746 491 MobiDBLite consensus disorder prediction 40 61 - -
Spst9g02746 491 Gene3D Tetratricopeptide repeat domain 95 262 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02746 Spst-Chr9 61663796 61665698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02746 270 474 Glycosyltransferase AT1G05670 20.476 7.92e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02746 - - gmx:100776657 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02746 9 61663796 61665698 Spst9g02746 9 61663796 61665698 ECH
Spst3g02879 3 78291565 78293662 Spst9g02746 9 61663796 61665698 PCT