Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02879 ATGGCTTCCGTATCTCTCTCCTTCTATTCTTCCATTGTTCCCTCTCCAATTCCCCGCCACAAATCCAACAGAATCCACACTCAAAACCCCACTTTTCGGGTTACCTGCTTGGCCGTTTCCTCTCCACCCTCCAAACCCGTTGTCAAAAAGCGACACTGGAAAAAAGGCGAGTTTCCTGGTACTTCCGAAACATTGTTTCACGATAGTACGAGGAGAACTCCCATCAAGAACATCAAGAAGAAGTTGGACAAAAAGAACAGTGCGAAGGCATGGGTCAACACTGTCACCGAATCCTTATCTGAACAAATCGACAAGAAGCAGTGGCTTCAAGCCCTCCAGGTATTTGATATGCTTAGAGAACAAACCTTCTACCAACCCAAAGAAGGGTCTTATTTGAAACTCATCGTGTTGCTTGGAAAATCTGGTCAACCCCACCGTGCCCACCAACTTTTCACCACAATGATTGAAGAAGGTTTAGAACCTACTCCTTATCTGTACACAGCATTGCTTGCTGCGTATTGCAGGAGCAACCTTATTGATGAAGCTTTTTCAGTTCTTAACGAGATGAAGAAGCTTCCTCTTTGCCAGCCCGATGTTTTCACTTACAGTACCCTGATCAAAGTTTGTGTGGATGCTTTCAAATTTGATTTGGTTGAGGCCCTGTACGAAGAAATGGCTGAAAGGTCCATCACGCCAAACACAGTCACTCAGAACATTGTTTTGGGTGGTTATGGCAAGGCCGGGAAGTTTGATCATATGGAGAAGGTTCTGTCCAGCATGTTGGAAAGCACTGCGTGCAAGCCTGATGTTTGGACAATGAACACGATCGTCAGTGTCTTTGGTAACATGGGTCAGATTGATATGATGGAGAAATGGTATGAAAAATTCCGTAACTTTGGGATAGAACCTGAAACGCGCACTTTCAATATTTTGATTGGTGCTTATGGAAAGAAAAAAATGTATGACAAAATGTCATCTGTTATGGAGTATATGCGGAAGTTGCAATTTCCATGGACGACCTCTACTTATAACAATGTGATTGAGGCATTCGCAGATGCAGGTGACGTTAAGCACATGGAATGTACATTTGATCAGATGCGTGCCGAGGGTATGAAAACAGATACCAAAACTTTCTGCTGCCTTATCAATGGTTATGCAAATGCAGGTCTCTTCCATAAAGTAATTAGCAGTGTTCACTTGGCTGGAAAGTTTGAGATACCTGAGAATGTTGCCTTTTATAACGCAGTCTTGTCTGCATGTGCAAAGGCAGAGGATTTGATGGAAATGGAGCGGGTTTTCAAGCGTATGAAAGATAGCCAATGTCAAGCAGACGAAACAACATACATGATCATGATTGAAGCATATAGGAAAGAGGGTATGAACGACAAAGTATACTACATAGAGCAGGAAAAGCTGACAATGATGACCTACGATAAATAA 1440 0.4285 MASVSLSFYSSIVPSPIPRHKSNRIHTQNPTFRVTCLAVSSPPSKPVVKKRHWKKGEFPGTSETLFHDSTRRTPIKNIKKKLDKKNSAKAWVNTVTESLSEQIDKKQWLQALQVFDMLREQTFYQPKEGSYLKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPYLYTALLAAYCRSNLIDEAFSVLNEMKKLPLCQPDVFTYSTLIKVCVDAFKFDLVEALYEEMAERSITPNTVTQNIVLGGYGKAGKFDHMEKVLSSMLESTACKPDVWTMNTIVSVFGNMGQIDMMEKWYEKFRNFGIEPETRTFNILIGAYGKKKMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADAGDVKHMECTFDQMRAEGMKTDTKTFCCLINGYANAGLFHKVISSVHLAGKFEIPENVAFYNAVLSACAKAEDLMEMERVFKRMKDSQCQADETTYMIMIEAYRKEGMNDKVYYIEQEKLTMMTYDK 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02879 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Spst3g02879 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Spst3g02879 479 NCBIfam pentatricopeptide repeat 200 234 IPR002885 -
Spst3g02879 479 NCBIfam pentatricopeptide repeat 272 303 IPR002885 -
Spst3g02879 479 NCBIfam pentatricopeptide repeat 131 162 IPR002885 -
Spst3g02879 479 NCBIfam pentatricopeptide repeat 307 335 IPR002885 -
Spst3g02879 479 NCBIfam pentatricopeptide repeat 342 374 IPR002885 -
Spst3g02879 479 NCBIfam pentatricopeptide repeat 413 444 IPR002885 -
Spst3g02879 479 NCBIfam pentatricopeptide repeat 164 192 IPR002885 -
Spst3g02879 479 NCBIfam pentatricopeptide repeat 235 270 IPR002885 -
Spst3g02879 479 Gene3D Tetratricopeptide repeat domain 92 262 IPR011990 GO:0005515
Spst3g02879 479 Pfam PPR repeat 130 159 IPR002885 -
Spst3g02879 479 Pfam PPR repeat 307 334 IPR002885 -
Spst3g02879 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Spst3g02879 479 Pfam PPR repeat family 166 209 IPR002885 -
Spst3g02879 479 Pfam PPR repeat family 340 387 IPR002885 -
Spst3g02879 479 Pfam PPR repeat family 409 455 IPR002885 -
Spst3g02879 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Spst3g02879 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Spst3g02879 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Spst3g02879 479 Pfam Pentatricopeptide repeat domain 221 283 IPR002885 -
Spst3g02879 479 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 161 391 - -
Spst3g02879 479 Gene3D Tetratricopeptide repeat domain 334 396 IPR011990 GO:0005515
Spst3g02879 479 Gene3D Tetratricopeptide repeat domain 397 474 IPR011990 GO:0005515
Spst3g02879 479 Gene3D Tetratricopeptide repeat domain 263 333 IPR011990 GO:0005515
Spst3g02879 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Spst3g02879 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 268 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02879 Spst-Chr3 78291565 78293662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02879 95 472 Glycosyltransferase AT1G05670 21.853 9.93e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02879 - - gmx:100813729 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02879 3 78291565 78293662 Spst3g02879 3 78291565 78293662 ECH
Spst3g02879 3 78291565 78293662 Spst9g02746 9 61663796 61665698 PCT