Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02271 ATGGAATACCCTCCATCATATAGCGTCTCTTCATCTTCTCACTCCTCCCACGATGAACCAGGCTCAGTATCCTTCTCTTCGCAACGCAGCCTTATTTCAGTTCCATCCCTCAACCCGTCCACCACCGCCACCAGCACCACCACCTTCCACCACTGCCTCACCACCTTCAAGGGTCACACCTCCTACATCTCCTCCCTAACCATCTCCGGCAAATTCCTCTACACAGGCTCCTCCGACAGAGAAATCAGGTCCTGGAACCGCACTCCTCTCAACTCTCACCCTCAAAACACCGTTCTTGCCGGAAACGGCGCCGTTAAGTCCTTAGTAATCCAATCCAACAAACTCTTCAGCGCCCACCAAGACCACAAAATCCGCGTATGGAAAATCAGCAACAGTAATAGTAACCACAGTAGCAACCACAACAACAGTAACCACGAACATGTTCACGACCATCAAAAATACACGCACGTGGCCACACTCCCCACCTTCGGGGACCGCGCCTCCAAGGTTCTGATCCCGAAGAACCACGTCCAAATCCGAAGGCACAAGAAGTGCACGTGGGTCCATCACGTAGACACAGTGTCCGCGCTCGCCCTGTCCAAAGATGGGACCTTGCTGTACTCCGTTTCGTGGGACAGAACCATCAAAATCTGGAGAACCAAGGACTTTGCGTGCCTGGAGTCTATCACCAACGCACACGACGACGCCATAAACGCCGTCGCGGTTTCATTCGATGGACACGTGTACACGGGATCAGCAGACAAGAGAATCAAGGTATGGAGGAAAGAGGAAGGGGAAAAGAAACACACGTTGGTGGAGACTTTGGAGAAGCACAATTCTGGGGTGAATGCGTTGGCCCTGAGCAGTGACGAAACCCTTTTGTATTCGGGTGCATGCGATAGGTCCGTCTTGGTTTGGGAGAAAGAGGGAGGGAGAATGGGGTTGGTGGGTGCGTTAAGGGGCCACAAAAAATCCATTTTGTGTTTGTCTGTTGTTGCTGATTTGGTGTGCAGCGGCTCCGCGGATAAAACGATTAGAATTTGGCGAGGTGTTCACGCACAATATTCTTGTTTAGCTGTTTTGGAAGGACATACGGGTTCGATCAAGTGCTTAACTGCAGTGGTTGACCACTGTAACCCGTCGCACTCCCAAGCATCTTTTCTAGTCTATAGTGGCGGTTTGGACTGTGACATTAAGGTTTGGCAGATTTTAGTTCCTGATATCTAA 1227 0.5094 MEYPPSYSVSSSSHSSHDEPGSVSFSSQRSLISVPSLNPSTTATSTTTFHHCLTTFKGHTSYISSLTISGKFLYTGSSDREIRSWNRTPLNSHPQNTVLAGNGAVKSLVIQSNKLFSAHQDHKIRVWKISNSNSNHSSNHNNSNHEHVHDHQKYTHVATLPTFGDRASKVLIPKNHVQIRRHKKCTWVHHVDTVSALALSKDGTLLYSVSWDRTIKIWRTKDFACLESITNAHDDAINAVAVSFDGHVYTGSADKRIKVWRKEEGEKKHTLVETLEKHNSGVNALALSSDETLLYSGACDRSVLVWEKEGGRMGLVGALRGHKKSILCLSVVADLVCSGSADKTIRIWRGVHAQYSCLAVLEGHTGSIKCLTAVVDHCNPSHSQASFLVYSGGLDCDIKVWQILVPDI 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02271 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 270 IPR001680 GO:0005515
Spst9g02271 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 275 307 IPR001680 GO:0005515
Spst9g02271 408 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 13 403 IPR045182 -
Spst9g02271 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 218 - -
Spst9g02271 408 SUPERFAMILY WD40 repeat-like 51 403 IPR036322 GO:0005515
Spst9g02271 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 86 IPR001680 GO:0005515
Spst9g02271 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 275 307 - -
Spst9g02271 408 Gene3D - 7 163 IPR015943 GO:0005515
Spst9g02271 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 348 - -
Spst9g02271 408 Gene3D - 176 405 IPR015943 GO:0005515
Spst9g02271 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 348 IPR001680 GO:0005515
Spst9g02271 408 SMART WD40_4 180 219 IPR001680 GO:0005515
Spst9g02271 408 SMART WD40_4 268 307 IPR001680 GO:0005515
Spst9g02271 408 SMART WD40_4 49 86 IPR001680 GO:0005515
Spst9g02271 408 SMART WD40_4 354 402 IPR001680 GO:0005515
Spst9g02271 408 SMART WD40_4 222 261 IPR001680 GO:0005515
Spst9g02271 408 SMART WD40_4 91 128 IPR001680 GO:0005515
Spst9g02271 408 SMART WD40_4 312 349 IPR001680 GO:0005515
Spst9g02271 408 FunFam BnaA09g28200D protein 177 265 - -
Spst9g02271 408 CDD WD40 52 402 - -
Spst9g02271 408 Pfam WD domain, G-beta repeat 226 260 IPR001680 GO:0005515
Spst9g02271 408 Pfam WD domain, G-beta repeat 188 218 IPR001680 GO:0005515
Spst9g02271 408 Pfam WD domain, G-beta repeat 356 401 IPR001680 GO:0005515
Spst9g02271 408 Pfam WD domain, G-beta repeat 52 86 IPR001680 GO:0005515
Spst9g02271 408 Pfam WD domain, G-beta repeat 316 348 IPR001680 GO:0005515
Spst9g02271 408 Pfam WD domain, G-beta repeat 272 306 IPR001680 GO:0005515
Spst9g02271 408 MobiDBLite consensus disorder prediction 1 25 - -
Spst9g02271 408 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Spst9g02271 408 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 56 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02271 Spst-Chr9 53044219 53045445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02271 232 403 Miscellaneous Gene Families AT5G08390 25.281 2.23e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02271 - - gmx:100777242 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04613 3 97930756 97931928 Spst9g02271 9 53044219 53045445 ECH
Spst9g02271 9 53044219 53045445 Spst9g02271 9 53044219 53045445 ECH
Spst3g04613 3 97930756 97931928 Spst9g02271 9 53044219 53045445 PCT