Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04613 ATGGAACACACCAGATCCTTCAACGACTCCAATAATAGTCTCTCTTCACAACGAAGTCTCGCTTCAGTTCCTTCCCTCAACTCACACTCACACTTCTTCAACGCTTCCACCACCTCATACACGTGCCTCGCCACTCTCAAACCCCACACCTCCTCCTACACCTCTTCCCTCACCCTCGCCGGCAAATTTCTCTATGCAGGCTCCTCCGACAGAGAAATCAGGTCCTGGAACCACACCATTTTCCTCTCCCCCCAAGACCAACAAAACACCAACATCGTAACCGCGGGAAAAGGTGCTGTGAAATCAATAGTGGTCCACTCCGACAAGCTCTTCACCGCACACCAAGACCATAAAATCCGCGTCTGGAGAATCACCACCCTCGAACACGACCACCAGAAGTACACACGTGTGGCCACACTCCCCACGCTCGGCGACCGCGTCACCAAAATCTTCATCCCTAAGAATCACGTTCAGATTCGCCGCCACAAGAAGTGCACCTGGGTTCACCACGTGGACACTGTCTCTTCCCTCGCCTTGTCCCACGAAGGAAAGCTCTTGTACTCAGTTTCTTGGGACCGCACGATCAAGGTTTGGCGAACGAAAGACTTCGCGTGCTTGGAGTCCGTGAGCAATGCGCACGACGACGCCATAAACGCAGTGGCAGTTTCTTACGATGGGCACGTGTACACCGGATCCACCGACAAGAGAATCAGGGTTTGGAGAAAAAGGGAAGGGGAGAAGAAACACTCGCTGGTGGACACGTTGGAGAAACACAACTCAGGGATTAACGCTTTGGCTCTTAGCAGTGACGGGTGCGTGTTGTATTCTGGTGCATGTGATAGGTCAATACTGGTTTCGGAGAAGGGAGAGAATGGTAACTTGGTGGTGGTTGGTGCTTTGAGAGGGCACACCAAGTCCATTTTGTGCTTGGCTGTGGTTTCGGATTTGGTGTGTAGTGGTTCAGAGGATAAAACGGTTCGTATTTGGAGAGGGATTCAGAAGGAGTATTCATGTTTAGCCGTTTTGGAAGGCCATAGGAGTCCCATTAAGAGCCTAACTGCAACGGTTGATCCTACTGATCACCCTTCCCAACCCTCTTTTCTTGTCTACAGTGGCAGTTTGGACAGTGATGTCAAGGCTTGGCAGGTTTTTGTTCCTCTTCTTTCAACCTAA 1173 0.5107 MEHTRSFNDSNNSLSSQRSLASVPSLNSHSHFFNASTTSYTCLATLKPHTSSYTSSLTLAGKFLYAGSSDREIRSWNHTIFLSPQDQQNTNIVTAGKGAVKSIVVHSDKLFTAHQDHKIRVWRITTLEHDHQKYTRVATLPTLGDRVTKIFIPKNHVQIRRHKKCTWVHHVDTVSSLALSHEGKLLYSVSWDRTIKVWRTKDFACLESVSNAHDDAINAVAVSYDGHVYTGSTDKRIRVWRKREGEKKHSLVDTLEKHNSGINALALSSDGCVLYSGACDRSILVSEKGENGNLVVVGALRGHTKSILCLAVVSDLVCSGSEDKTVRIWRGIQKEYSCLAVLEGHRSPIKSLTATVDPTDHPSQPSFLVYSGSLDSDVKAWQVFVPLLST 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04613 390 Pfam WD domain, G-beta repeat 298 329 IPR001680 GO:0005515
Spst3g04613 390 Pfam WD domain, G-beta repeat 337 381 IPR001680 GO:0005515
Spst3g04613 390 Pfam WD domain, G-beta repeat 206 240 IPR001680 GO:0005515
Spst3g04613 390 Pfam WD domain, G-beta repeat 252 284 IPR001680 GO:0005515
Spst3g04613 390 Pfam WD domain, G-beta repeat 168 198 IPR001680 GO:0005515
Spst3g04613 390 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 300 329 - -
Spst3g04613 390 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 383 IPR045182 -
Spst3g04613 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 167 208 IPR001680 GO:0005515
Spst3g04613 390 SUPERFAMILY WD40 repeat-like 39 383 IPR036322 GO:0005515
Spst3g04613 390 SMART WD40_4 86 123 IPR001680 GO:0005515
Spst3g04613 390 SMART WD40_4 39 77 IPR001680 GO:0005515
Spst3g04613 390 SMART WD40_4 293 330 IPR001680 GO:0005515
Spst3g04613 390 SMART WD40_4 202 241 IPR001680 GO:0005515
Spst3g04613 390 SMART WD40_4 335 382 IPR001680 GO:0005515
Spst3g04613 390 SMART WD40_4 248 287 IPR001680 GO:0005515
Spst3g04613 390 SMART WD40_4 160 199 IPR001680 GO:0005515
Spst3g04613 390 Gene3D - 149 385 IPR015943 GO:0005515
Spst3g04613 390 Gene3D - 9 148 IPR015943 GO:0005515
Spst3g04613 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 329 IPR001680 GO:0005515
Spst3g04613 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 210 250 IPR001680 GO:0005515
Spst3g04613 390 CDD WD40 42 382 - -
Spst3g04613 390 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 167 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04613 Spst-Chr3 97930756 97931928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04613 212 382 Acyl Lipid Metabolism Gene Families AT3G18860 27.933 2.89e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04613 - - gmx:100801906 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04613 3 97930756 97931928 Spst9g02271 9 53044219 53045445 ECH
Spst3g04613 3 97930756 97931928 Spst3g04613 3 97930756 97931928 ECH
Spst3g04613 3 97930756 97931928 Spst9g02271 9 53044219 53045445 PCT