Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02194 ATGATGCAGTCGTTGTTGAGCACGAAGACGTGCCTGGGTGTGGGGTTACCGGTTTTAACGAACTCCGAGGAAAGGAGTACGAGGAGGAGGATGCAAAGCGTGAATTGTAGGAACCATAGGAATTGGAGGAGTGTGGTTGTGTCGTGCGGTTCGAAGAGGAACCAGAACGAGGGAATTGACGAGACTGGATGGTCGAATTCGAGGTCGTTTTTGTCTCCGAGTCACAGCTACGCGATCTTGAAGCACCGGATGGAGATAGCGGCAAAGTCCGAGCATTACGAAGAGGCTGCGAGGATTCGTGACTCGCTCAAATGCTTCGAGGACGAGGTTCCTGTTCTGCGTCTGCGGAAATTGTTGAAGGAAGCTGTTGCTGACGAGAGATTTCAGGACGCAGTTAGATATCGTGATCAGCTAAAAGAAATTGCTCCACATTCTCTCTTAAAATGTTCAAGTGATGCTACAACCTTGGGAATTCGGGTGCAAGTTAAGAGTGTATATTTAGAGGGCAGAAGTCAACCTACAGAGGAGGTATATTTCTTTGAATATAGAATCAGAATTACAAATAACACAAATCGCCCAGTTCAACTTCTCAGAAGGCACTGGATTATAACTGATGCTAATGGAAAAACTGAAAATTTCTGGGGAATTGGGGTTGGTGGTGAACAGCCTGCTATATTTCCTAGGAGTAGTATTGAGTTCTCTTCTACATGCCCTTTAAACTCACAAAATGGTAGAATGTTTGATCTTCCCATTGAACAGAAAACCAGATGTTTAAATCTCTCTGCTATAATACAGGAAGGTGACTTTGAGATGATACATGTTGATCGAGTAGGTCCAAGAGCATTTAACGTGGCCGTTGAACCTTTTTCTCTCTCTCTACTTGGAGATGATGATGACGGTGAAACTATTTGA 912 0.443 MMQSLLSTKTCLGVGLPVLTNSEERSTRRRMQSVNCRNHRNWRSVVVSCGSKRNQNEGIDETGWSNSRSFLSPSHSYAILKHRMEIAAKSEHYEEAARIRDSLKCFEDEVPVLRLRKLLKEAVADERFQDAVRYRDQLKEIAPHSLLKCSSDATTLGIRVQVKSVYLEGRSQPTEEVYFFEYRIRITNNTNRPVQLLRRHWIITDANGKTENFWGIGVGGEQPAIFPRSSIEFSSTCPLNSQNGRMFDLPIEQKTRCLNLSAIIQEGDFEMIHVDRVGPRAFNVAVEPFSLSLLGDDDDGETI 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02194 303 SUPERFAMILY ApaG-like 154 247 IPR036767 -
Spst9g02194 303 Gene3D ApaG domain 148 297 IPR036767 -
Spst9g02194 303 ProSiteProfiles ApaG domain profile. 152 298 IPR007474 -
Spst9g02194 303 ProSiteProfiles UVR domain profile. 74 109 IPR001943 GO:0005515
Spst9g02194 303 PANTHER OS05G0170800 PROTEIN 24 299 - -
Spst9g02194 303 Pfam ApaG domain 170 246 IPR007474 -
Spst9g02194 303 Pfam UvrB/uvrC motif 83 104 IPR001943 GO:0005515
Spst9g02194 303 Pfam UvrB/uvrC motif 114 141 IPR001943 GO:0005515
Spst9g02194 303 SUPERFAMILY C-terminal UvrC-binding domain of UvrB 78 107 IPR036876 -
Spst9g02194 303 ProSiteProfiles UVR domain profile. 109 144 IPR001943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02194 Spst-Chr9 48964522 48966899 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02194 - K06195 gmx:100799029 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02194 9 48964522 48966899 Spst9g02194 9 48964522 48966899 ECH
Spst3g04553 3 97186570 97195359 Spst9g02194 9 48964522 48966899 PCT