Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04553 ATGCAATCGCTATCGTTAAGTATGAATCTGAGGAGTAGTAGTTCAGCGAATTTTCTGTTGCTGGGTTCGGAGGCGAGAGTGAGAAGAAGAAGTGTTATCGTAGCGTGTGCTTCGGAGGGAGACAGTGGTAGTAGCACCAGCTCCTTTCTCTCTCGGACCCAAACTTACGCTCTTCTTAAGCAACAGTTGCAAGTAGCTGCTAAATCTGAGGATTACAAGGAAGCAGCTAGAATTCGAGATTCGTTGAAGTTGTTCGAGGACGAGGAGCCTGTGTTGCGTCTAAGGAGACTATTGAAGGAAGCAATTGCTGAAGAGAGATTCCAGGATGCTGCTAGTTATCGTGATGAACTAAACAAAATTGCCCCACACTCTCTTTTAAAATGTTGCAGTGATGCTACAACATTGGGAATCAGGGTTCAAGTTAGGAGTGTATATATTGAGGGCAGAAGTCAGCCTTCAAAGGGGTTATACTTCTTTGCATATAGAATAAGAATTACTAATAACTCAGACCACCCTGTTCAACTTCTTAGAAGGCATTGGATAATAACTGATGCTAATGGGAAAACGGAAAATGTTTGGGGAATTGGAGTTGTTGGTGAACAGCCGTTGATTCTTCCTGGGAATAGTTTTGAATACTCTTCAGCATGCCCACTGAGCACACCAAATGGTAGAATGGAAGGTGACTATGAAATGATCCATGTTGAAAGAGTAGGCTCACGATCATTCAATGTGGCCATTGCCCCGTTTTCTCTCTCTCTTATTGGAGATGATGATGGTTGCTCTCCAAAGGGCACGTGGCAACCCATCATGACTGCCGATACAACCACACGAAGTTACTGGTTGAATTGGAGGGTCTTGGTTTGTGTCATTTGGGTTCTGCTTTCAGCTATCTTTTCTTCATTGATCATATTGAAGTATGAAGTTTCACGGAAGAAAACAAGAAATGATGACAAGGAAGATCAGAAAGAAACATCGTCGACTTTGTTTGAGGATGAAATTTGGAGGCCTTGTTTGAAAGGAATCCACCCTGTCTGGTTACTGGGGTTTAGAGTTTTTGCATTTGTTGTGCTTATGGTGCTTCTCATACTCACTGCTACTGCGGACGGAGGATGCATTTTCTACTTTTACACTCAAGATTTTGGTAGCAGTGCAATCATTCCTCTTCTTATGGAATTGACGAGGCTTATAAAATTCCCTTTATATCATCGGATTCTGCGTGACTAA 1224 0.4248 MQSLSLSMNLRSSSSANFLLLGSEARVRRRSVIVACASEGDSGSSTSSFLSRTQTYALLKQQLQVAAKSEDYKEAARIRDSLKLFEDEEPVLRLRRLLKEAIAEERFQDAASYRDELNKIAPHSLLKCCSDATTLGIRVQVRSVYIEGRSQPSKGLYFFAYRIRITNNSDHPVQLLRRHWIITDANGKTENVWGIGVVGEQPLILPGNSFEYSSACPLSTPNGRMEGDYEMIHVERVGSRSFNVAIAPFSLSLIGDDDGCSPKGTWQPIMTADTTTRSYWLNWRVLVCVIWVLLSAIFSSLIILKYEVSRKKTRNDDKEDQKETSSTLFEDEIWRPCLKGIHPVWLLGFRVFAFVVLMVLLILTATADGGCIFYFYTQDFGSSAIIPLLMELTRLIKFPLYHRILRD 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04553 407 Hamap Protein ApaG [apaG]. 130 258 IPR023065 -
Spst3g04553 407 ProSiteProfiles UVR domain profile. 88 123 IPR001943 GO:0005515
Spst3g04553 407 Pfam UvrB/uvrC motif 93 120 IPR001943 GO:0005515
Spst3g04553 407 SUPERFAMILY ApaG-like 133 252 IPR036767 -
Spst3g04553 407 Gene3D ApaG domain 127 256 IPR036767 -
Spst3g04553 407 Pfam ApaG domain 149 232 IPR007474 -
Spst3g04553 407 ProSiteProfiles ApaG domain profile. 131 258 IPR007474 -
Spst3g04553 407 ProSiteProfiles UVR domain profile. 53 88 IPR001943 GO:0005515
Spst3g04553 407 PANTHER OS05G0170800 PROTEIN 37 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04553 Spst-Chr3 97186570 97195359 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04553 - K06195 gmx:100782176 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04553 3 97186570 97195359 Spst3g04553 3 97186570 97195359 ECH
Spst3g04553 3 97186570 97195359 Spst9g02194 9 48964522 48966899 PCT