Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02146 ATGGGGGAGGTCTTGATTAAGTTTCTCTCCCTTTCTTTCTCTATTTTCTCTTATATGTGTTTACAGAGAACTAATTTTCTGCTTTTTGTGTTTCAGGAGGAAAAGAAACCGGAGGAAACCAAGGTTGAGGAGAAAAAACCTGAGGAAGCAAAAAAGATACAAGAGGAGAAGAAGGAAGAATCGGCAGAAAAATCGGCCGGAGACAAAGACAAAAAGCCGGAAGAGGAGAAGGAAGAAGTGGTCCCACCACCGCCACCGCCCGAGATTGTGCTCAAAGTGTTCATGCATTGCGAGGGTTGTGCTCGCAAGGTTCGTCGCTCCCTCAAAGGATTCCCAGGTGTGGAAGACGTGGTCACCGATTGCAAATTTCACAAGGTGATTGTTAAGGGAGAGAAAGCTGATCCTCTCAAGGTTTTGGAGAGAATACAGAGAAAGAGTCACAGACAGGTCGAGCTTCTCTCTCCCATCCCGAAACCACCAGAGGAGAAGAAGAAGGTGCCGGAAGAAGAAAAGCCCGTTCTGTCCGAACAGAAGGAAGAAAAGCTTCCTCCAATTGTGACGAATCTGAAAGTTCACATGCACTGTGAAGCTTGCTCACTGGAAATCAAGAGGCGCATACTGAGAATGAAGGGAGTGGAATCAGCAGAAGCCGATCTGAAGAACTCACTGGTGAGTGTGAAGGGTGTGTATGATCCAGAGAAGCTGGTTGAGTATGTGTTCAAGAGAACTGGGAAGCACGCAGTGATAGTGAAGCAAGAGGCAGAAAAGAAAGAGAAGGTGGAGGAAGAAGCAAAAGAGGAGAAAAAGGAGGAGGGTGAGAAAGAGAAGAAGAGTGGTGAAGGAGAGGAAAAGAAGGAAAAGAAAGAGGAAGAAGCAAAGGGTGAGAGCAAAGCAGCAGAGGAAACGGCAGCATCTAGTGAAGACAGCAACAAGGTTGTTCCAGAGGTGAAGATCAATGAATACTTCTATAACCCACCAAGGTATGGCATGGAGGTGTATGCATATCCTGCACACCCTGTACACCCTGCACACCCTGCACACCCTGCGTATTACCATGCCTACCCTCCCCAGATGTTCAGCGATGAGAACCCAAATGCTTGCACTGTCATGTAA 1113 0.4717 MGEVLIKFLSLSFSIFSYMCLQRTNFLLFVFQEEKKPEETKVEEKKPEEAKKIQEEKKEESAEKSAGDKDKKPEEEKEEVVPPPPPPEIVLKVFMHCEGCARKVRRSLKGFPGVEDVVTDCKFHKVIVKGEKADPLKVLERIQRKSHRQVELLSPIPKPPEEKKKVPEEEKPVLSEQKEEKLPPIVTNLKVHMHCEACSLEIKRRILRMKGVESAEADLKNSLVSVKGVYDPEKLVEYVFKRTGKHAVIVKQEAEKKEKVEEEAKEEKKEEGEKEKKSGEGEEKKEKKEEEAKGESKAAEETAASSEDSNKVVPEVKINEYFYNPPRYGMEVYAYPAHPVHPAHPAHPAYYHAYPPQMFSDENPNACTVM 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02146 370 Coils Coil 282 302 - -
Spst9g02146 370 Pfam Heavy-metal-associated domain 191 245 IPR006121 GO:0046872
Spst9g02146 370 Pfam Heavy-metal-associated domain 91 145 IPR006121 GO:0046872
Spst9g02146 370 CDD HMA 95 151 IPR006121 GO:0046872
Spst9g02146 370 Gene3D - 185 250 - -
Spst9g02146 370 ProSiteProfiles Heavy-metal-associated domain profile. 86 150 IPR006121 GO:0046872
Spst9g02146 370 Coils Coil 247 277 - -
Spst9g02146 370 MobiDBLite consensus disorder prediction 253 311 - -
Spst9g02146 370 MobiDBLite consensus disorder prediction 253 304 - -
Spst9g02146 370 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 71 370 IPR044577 GO:0046872
Spst9g02146 370 MobiDBLite consensus disorder prediction 157 178 - -
Spst9g02146 370 SUPERFAMILY HMA, heavy metal-associated domain 186 249 IPR036163 GO:0046872
Spst9g02146 370 CDD HMA 189 247 IPR006121 GO:0046872
Spst9g02146 370 SUPERFAMILY HMA, heavy metal-associated domain 90 145 IPR036163 GO:0046872
Spst9g02146 370 MobiDBLite consensus disorder prediction 155 178 - -
Spst9g02146 370 ProSiteProfiles Heavy-metal-associated domain profile. 184 248 IPR006121 GO:0046872
Spst9g02146 370 MobiDBLite consensus disorder prediction 36 87 - -
Spst9g02146 370 Gene3D - 86 158 - -
Spst9g02146 370 MobiDBLite consensus disorder prediction 36 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02146 Spst-Chr9 46199623 46201316 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02146 - - gmx:100787932 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02146 9 46199623 46201316 Spst9g02146 9 46199623 46201316 ECH
Spst3g01145 3 14815344 14821648 Spst9g02146 9 46199623 46201316 PCT