Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01145 ATGGTTTCACTCTCTTCTCCCTGTTTCAGTACTGATGTTTTGATTGGGGTTGGTGATAAGAGTACTGAAGCACATGGTAATCCTCAACCTCTGCAACTTTGTGTTCCCTACTCCCAGATACCCCAGGAGGATGAGTGTAAGGTGGGGAGGACCACAGAGGAAGAGATTCTAGAGAATTCCGAAACTGCCCAAGTGGAACACAGGAAAAGCAATGAGAGTGTAAACACCACCAAGTACCATGTGTTGGAAGCAGGAACCCCCCCGGTGCACGTGCCTCTTAAAAGATGCCACGAAGAGAAAAAACCAGAAGAAAGCAAAGTTGAGGAGAAAAAAACAGAGGAACCAAAGGAAGAGAAGAAACAGGAGGAAGTTAAAAAAGCAGAGGACTCAAAAGATGGAAAGGAATCCAAGGAGGAGGAATCTGCGCCGCCAGAAATCGTGCTTAGAGTCTTCATGCATTGCGAGGGTTGTGCCCGGAAGGTTCGCCGCTCCCTCAAAGGATTTCCAGGGGTGGAGAATATACTCACGGATTGCAAGTCTCACAAGGTGGTTGTGAAAGGCGAAAAGGCGGATCCGCTGAAGGTTCTAGAAAGAGTGCAGAAGAAGAGCCACAGAAAAGTTGAACTTCTCTCTCCAATCCCAAAACCACCAGACGAAGAGAAGAAACCCGTGGAAGAAGAGAAACCCAAACCAGAGGAGAAAAAAGAAGAGCCTCAGGTTATCACAGTCGTTCTCAAAGTCCACATGCATTGCGAAGCTTGCGCGCAGGAAATCAAGAGACGCATAGAGAAAATGAAAGGTGTGGAATCAGTGGAAGCAGATCTGAAGAGTTCAGAGGTGAGCGTGAAGGGGGTGTTCGAGGCAGAGAAGTTGGTGGAACACGTGTCGAAGAGGACAGGGAAGCATGCAGAGATAGTGAAGCAAGAGGCAGAGAAGAAGGAGGAGGTAGCCAAGGAAGAGACAGGGGAGAAGAAAGGAGAGGAAGGTGAGAAGGAGAAAGAGAGTGGTGATAAGGGAGAGGAAAAGAAAGAAGGAGTAGAGGGTGAAGGGAAAACAGATGAGGGAGGCACAGAAGAAAGCACAGTGGTGGAGCTGAAAAAGAGTGAGTATTATTACAACCCTCCAAGGTATGGAATGGAGTTCTATGCATACCCTGGACCAGCTTACCCTCCCCAGATCTTCAGTGATGAGAACCCCAATGCCTGCACTGTCATGTAA 1218 0.4811 MVSLSSPCFSTDVLIGVGDKSTEAHGNPQPLQLCVPYSQIPQEDECKVGRTTEEEILENSETAQVEHRKSNESVNTTKYHVLEAGTPPVHVPLKRCHEEKKPEESKVEEKKTEEPKEEKKQEEVKKAEDSKDGKESKEEESAPPEIVLRVFMHCEGCARKVRRSLKGFPGVENILTDCKSHKVVVKGEKADPLKVLERVQKKSHRKVELLSPIPKPPDEEKKPVEEEKPKPEEKKEEPQVITVVLKVHMHCEACAQEIKRRIEKMKGVESVEADLKSSEVSVKGVFEAEKLVEHVSKRTGKHAEIVKQEAEKKEEVAKEETGEKKGEEGEKEKESGDKGEEKKEGVEGEGKTDEGGTEESTVVELKKSEYYYNPPRYGMEFYAYPGPAYPPQIFSDENPNACTVM 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01145 405 Coils Coil 117 137 - -
Spst3g01145 405 CDD HMA 152 208 IPR006121 GO:0046872
Spst3g01145 405 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 134 405 IPR044577 GO:0046872
Spst3g01145 405 MobiDBLite consensus disorder prediction 299 369 - -
Spst3g01145 405 Coils Coil 303 323 - -
Spst3g01145 405 CDD HMA 244 304 IPR006121 GO:0046872
Spst3g01145 405 MobiDBLite consensus disorder prediction 92 144 - -
Spst3g01145 405 MobiDBLite consensus disorder prediction 55 145 - -
Spst3g01145 405 MobiDBLite consensus disorder prediction 205 239 - -
Spst3g01145 405 MobiDBLite consensus disorder prediction 55 74 - -
Spst3g01145 405 ProSiteProfiles Heavy-metal-associated domain profile. 143 207 IPR006121 GO:0046872
Spst3g01145 405 SUPERFAMILY HMA, heavy metal-associated domain 148 202 IPR036163 GO:0046872
Spst3g01145 405 SUPERFAMILY HMA, heavy metal-associated domain 238 308 IPR036163 GO:0046872
Spst3g01145 405 Gene3D - 237 305 - -
Spst3g01145 405 Pfam Heavy-metal-associated domain 147 202 IPR006121 GO:0046872
Spst3g01145 405 Pfam Heavy-metal-associated domain 245 302 IPR006121 GO:0046872
Spst3g01145 405 Gene3D - 142 215 - -
Spst3g01145 405 MobiDBLite consensus disorder prediction 299 365 - -
Spst3g01145 405 ProSiteProfiles Heavy-metal-associated domain profile. 240 304 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01145 Spst-Chr3 14815344 14821648 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01145 - - gmx:100796289 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01145 3 14815344 14821648 Spst3g01145 3 14815344 14821648 ECH
Spst3g01145 3 14815344 14821648 Spst9g02146 9 46199623 46201316 PCT