Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02109 ATGAATAATCAAGCAAAGAATGTTGCTGCATCATCTTTGTTTGGTCATTCTGGAATGGCCACACAACCACACCACCCTAACCCCATTCAGCAATGGAACCATTCAATTTCAAACCCTTTAATCTCTCAATCACAGTCACAGTCACACCCTCAAACACAATTCCCTGGTCCCTTTCAGTTTTCAGAGTCCCAATCTCATGTGTTTGCACAAGCTCAGCATGCACAGGCACAATTGCAGTCTCATGCTTCACGTGCTCATCCACAACCTCAAACTCAGGCCTTCGCTCACTTGCATAGTGTAAATACTAACGCTGCTAATGGTACATCATCTCCGGCCACCGGAAGTGCTAAGCGAGCAACCCCAAAACCCCCGTTGAGGTCTCATAATTTGTCGAATATGAACCAATCCACGCCTTTTAAGTCCATGGAATCTCAGCGGCAAAAGAAGCAAACACCAGAAAAAGGGGCCATGTTTTTGCCTGAGTCTGCTCTTTATACTCAATTACTTGATTTTGAGACCCAGGTGGATACTGCTTTGGCCAGGAGAAAGTTTGATATACTGGAGGCTAGGCTCCCTCCCCATGTTCAGAAAACTCTTCGTGTTTATGTCTTCAATACCTTCTCAAATCATGCCAAAATGGATTCTGAGAATAGGAAGGCCGATGAATCTTCATGGTCTCTCAAGATAACTGGAAGGATATTGGAAGAAGGTACGGATTCCATGTCTGGAATTTTGCAGAGATCGAGTCCTTCCTACCCAAAGTTCTCTGCATTTTTCAAGAAAATTACCATACATTTGGATCAAAGCCTGTATCCTGATAATCATGTTATTGTCTGGGATAGTGCTCGTTCACCTACTCAACAGGATGGTTTTGAGGTGAAGAGGAAAGGAAATAAAGAATTTACTGCAATGATTGCAATAGAAATGAATTATACACCTGACAAGTTTATGGTTTCATCACAGCTGTCTAAACTTTTAGGGATTGAGGCTGAGACTCGTCCAAGAATAATAGCTTCTCTTTTTAACTATGTGAAGTCCAGGAAGCTACAGAGCCCAAATGACCCTTCGTTCTTCATTTGTGATCCTTCACTACAAAGGGTGTTTGGGGAAGAGAAGATGGGTTTCACCATGGTTTTTCAGAAGTTAGCACAGCATTTGTCACAACCACAGCCAATACGTATGGAGCACAAAATCAAGCTTTCTGGACATTCTCCAGTTGTATCTGCATGTTATGATATACAGGTTGATGTGCCTTTTCCACTGGAAAAGGACAAGTCTACATTCTTGGCAAGCCTTGAGAGCCAAAAGGAGATTGAAGCTTATGATGAGGCCATTTGCACTTCCTTAAAGAAGATCCAGGAGCATCGAAGAAGACGGGCTTTTTTTCTTAGCTTTAGTCAGTCTCCAGTAGAGTTTATTGATACTTTGATTACTTCTCAAAGCAAGGATTTGAAACTTGTGGCTGGAGATGCCAGCCGTAATGTTGAAAAGGAACTTCGTTCTGAGTTCTACAATCAACCATGGGTCGAGGATGCAGCCATTCGTTACTTGAACCGCAAGTCTGCAGGAAGTGATGCTCCTGGACGCAACTAA 1593 0.4281 MNNQAKNVAASSLFGHSGMATQPHHPNPIQQWNHSISNPLISQSQSQSHPQTQFPGPFQFSESQSHVFAQAQHAQAQLQSHASRAHPQPQTQAFAHLHSVNTNAANGTSSPATGSAKRATPKPPLRSHNLSNMNQSTPFKSMESQRQKKQTPEKGAMFLPESALYTQLLDFETQVDTALARRKFDILEARLPPHVQKTLRVYVFNTFSNHAKMDSENRKADESSWSLKITGRILEEGTDSMSGILQRSSPSYPKFSAFFKKITIHLDQSLYPDNHVIVWDSARSPTQQDGFEVKRKGNKEFTAMIAIEMNYTPDKFMVSSQLSKLLGIEAETRPRIIASLFNYVKSRKLQSPNDPSFFICDPSLQRVFGEEKMGFTMVFQKLAQHLSQPQPIRMEHKIKLSGHSPVVSACYDIQVDVPFPLEKDKSTFLASLESQKEIEAYDEAICTSLKKIQEHRRRRAFFLSFSQSPVEFIDTLITSQSKDLKLVAGDASRNVEKELRSEFYNQPWVEDAAIRYLNRKSAGSDAPGRN 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02109 530 SMART swib_2 312 391 IPR019835 -
Spst9g02109 530 Pfam SWIB/MDM2 domain 315 386 IPR003121 -
Spst9g02109 530 CDD SWIB_like 318 386 - -
Spst9g02109 530 MobiDBLite consensus disorder prediction 65 90 - -
Spst9g02109 530 SUPERFAMILY SWIB/MDM2 domain 307 396 IPR036885 -
Spst9g02109 530 ProSiteProfiles SWIB/MDM2 domain profile. 311 388 IPR003121 -
Spst9g02109 530 MobiDBLite consensus disorder prediction 102 155 - -
Spst9g02109 530 MobiDBLite consensus disorder prediction 125 145 - -
Spst9g02109 530 Gene3D SWIB/MDM2 domain 308 394 IPR036885 -
Spst9g02109 530 MobiDBLite consensus disorder prediction 102 116 - -
Spst9g02109 530 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 126 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02109 Spst-Chr9 43385194 43387180 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Spst9g02109 SWIB 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02109 K11650 - gmx:100784907 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04434 3 95905076 95907826 Spst9g02109 9 43385194 43387180 ECH
Spst9g02109 9 43385194 43387180 Spst9g02109 9 43385194 43387180 ECH
Spst3g04434 3 95905076 95907826 Spst9g02109 9 43385194 43387180 PCT