Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04434 ATGAACCACCCACAACCGCACCTTCTCTCACAGGCGCAGCCTCAACCACAAGGTGGTGCCTCTCACTTCCATGGCCACTTTCAGCTCTCGCAACCCCAAACCCACGTCCTCGCACAGCCACACCCTAGTCCTCACCCACAGGTGCACAACAATGCCAACACCAATGCCAACGTGGCAACACCTGCGCCTCCCAAGCGTGCAAATCACAAACCCCCTTCACGCCCTCCCGGTTCCTCCAACGCCACCCAATCCTCTGCCTTCAAGACGATGGAACTTACCGTGGCGCCTCCTCGGAAAAAGAGAAGCTGTCCCGAGAAGCTCATTCCTGACAAGGTGGCCAAGCTTGTGCCTGAGTCTGCTATTTATGCTAAGTTGCTTGAACTTGAGACCCACGTAGATTCTGCTTTGGTTAGGAAGAAAATTGATGTGCAGGAGAATGTTAGAAACCCTCGCTGTGTTAGGAGAACGCTTAGGATTTATGTATATAATACTTTTTCGAAACAGGTGAAAGTGGAACCTGGGAAGATTGATGTGGAGGAGCCTTCTTGGGCTCTTAAAATAACCGGAAGGGTGTTGGAAGATGGTAAGGATCCTGTGGCAGATGGAGTTTTGCCTAAAGAAAATCCAAAATTCTCGGCTTTCTTCAAGAAGATTACCATTTATTTGGATCAGGGTTTCTACCCAGAAAACCATGTTGTTGTGTGGGATAGTGCCTGTTCGGCCGGGCAACGCGATGGTTTTGAAGTGAAGAGGAAAGGAGATAAGGAATTCACCGCTGTGGTTAGAATGGCGATGAATTATTCGCCTGACAAGTTTGTGGTTTCAGCTCAGCTGGCTAGAGTTTTAGGGGTTGAGTTTGACTCTCGCGCAAGGATCATTGCTGCTCTTTGGCACTATGTGAAGGCTAAGAAACTACAGAGCCCGAATGACCCTTCGTTCTTCATGTGTGATGCTTCTCTCCAAAGAGTGTTTGGGGAGGAGAAGATGAAATTTTCTGTGGCTTCACAGAAGATATCACAACATTTGTCACCGCCACAGCCTATACACCTGGAGCATAAAATCAAGCTTTCGGGAAATTGTCCAGCCGGAGCTACATGTTATGATGTGCAGGTTGATGTGCCTCTTGCACTAGAAAAGGATATGTCTGCATTCTTGGCAAGCACTGAGAAGCACAAAGAGGTTGATGCTTTTGATAAACTGATATGTGATTCCATAAAGAAGATCCATGAACATCATAGGAGACGGGCATTCTTTCTTGGCTTTAGTCAGTCCCCAGCAGAGTTTATTAATGCTTTGATAGCTTCTCAGAGCAAGGATCTGAAGCTTGTTGCTGGAGATGTGAGTCATGATGTTGAAAATGAACGACGTTCTGAATTCTACAATCAACCATGGGTCGAGGATGCTGTTATTCGCTACCTGACCCGAAAAAATGCTCGCAGTGAAGCTCCTGCAAACATCTGA 1461 0.4723 MNHPQPHLLSQAQPQPQGGASHFHGHFQLSQPQTHVLAQPHPSPHPQVHNNANTNANVATPAPPKRANHKPPSRPPGSSNATQSSAFKTMELTVAPPRKKRSCPEKLIPDKVAKLVPESAIYAKLLELETHVDSALVRKKIDVQENVRNPRCVRRTLRIYVYNTFSKQVKVEPGKIDVEEPSWALKITGRVLEDGKDPVADGVLPKENPKFSAFFKKITIYLDQGFYPENHVVVWDSACSAGQRDGFEVKRKGDKEFTAVVRMAMNYSPDKFVVSAQLARVLGVEFDSRARIIAALWHYVKAKKLQSPNDPSFFMCDASLQRVFGEEKMKFSVASQKISQHLSPPQPIHLEHKIKLSGNCPAGATCYDVQVDVPLALEKDMSAFLASTEKHKEVDAFDKLICDSIKKIHEHHRRRAFFLGFSQSPAEFINALIASQSKDLKLVAGDVSHDVENERRSEFYNQPWVEDAVIRYLTRKNARSEAPANI 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04434 486 Pfam SWIB/MDM2 domain 271 342 IPR003121 -
Spst3g04434 486 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 91 441 - -
Spst3g04434 486 Gene3D SWIB/MDM2 domain 264 349 IPR036885 -
Spst3g04434 486 SMART swib_2 268 347 IPR019835 -
Spst3g04434 486 CDD SWIB_like 274 342 - -
Spst3g04434 486 MobiDBLite consensus disorder prediction 1 61 - -
Spst3g04434 486 SUPERFAMILY SWIB/MDM2 domain 263 352 IPR036885 -
Spst3g04434 486 ProSiteProfiles SWIB/MDM2 domain profile. 267 344 IPR003121 -
Spst3g04434 486 MobiDBLite consensus disorder prediction 1 103 - -
Spst3g04434 486 MobiDBLite consensus disorder prediction 73 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04434 Spst-Chr3 95905076 95907826 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Spst3g04434 SWIB 8.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04434 K11650 - gmx:100817271 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04434 3 95905076 95907826 Spst9g02109 9 43385194 43387180 ECH
Spst3g04434 3 95905076 95907826 Spst3g04434 3 95905076 95907826 ECH
Spst3g04434 3 95905076 95907826 Spst9g02109 9 43385194 43387180 PCT