Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02003 ATGGCTAGAGGGGAGAGAGCAGAGACGGAAAGTGGTGCGTCGTTACCCTCGGTTGGTACAGATGCGAAGAAGCGGAGAGTGACGTATTTCTACGAACCGTGCATCGGGGATTACTACTACGGTCAAGGCCACCCAATGAAGCCGCACCGCATTCGCATGGCCCACAACCTCATCGTCCACTACGGTCTCCACCGTCGCATGCAGGTCAACCGCCCCTTTCCCGCAGCTGAGGCCGACATCGGCCGCTTCCACTCCGATGACTACGTGGAGTTTCTGTCCTCCGTCTCGCCGCAAATCCTATCCGATAACTCTCACTCCCACTACCGCCAGCTTAAGCGCTTCAACGTCGGCGAAGACTGCCCTGTCTTCGATGGTCTCTTCGACTTCTGCAGCGCATCCGCCGGCGGTTCTATCGGTGCCTCCGTTAGCCTCAATCGTGGGGATGCCGACATCGCCATCAACTGGGCCGGCGGCCTGCACCACGCCAAGAAGGCAGAAGCCTCCGGCTTCTGCTACGTCAACGACATTGTTCTCGGCATTCTCGAACTTCTCAAAGTTCATAGGCGTGTGCTGTATGTTGATATTGATGTTCACCATGGAGATGGGGTCGAGGAGGCATTTTACACTACTGATAGGGTGATGACAGTGTCATTTCACAAGTTTGGGGAATTTTTCCCAGGAACTGGGCACATTAAAGACATTGGAGTGGGTGCTGGAAAGAATTATTCTCTAAATGTCCCCCTCAATGATGGATTGGATGATGAGACTTTCCGTGGTCTGTTTCGCCCCATCATTCAAAAAGTTATGGATGTTTATCAACCGGATGCAGTTGTTCTTCAGTGTGGAGCTGACTCCTTGTCTGGTGACCGGTTGGGTTGCTTCAACTTGACTGTGAAGGGTCATGCAGATTGTCTTCGTTTCCTTAGATCATTCAATGTTCCTTTAATGGTATTGGGTGGGGGAGGATATACAGTTCGGAATGTTGCTCGTTGTTGGTGTTACGAGACTGCGGTGGCAGTCGGAGTGGAGCCTAATCCTAAGTTGCCTTACAATGAATATTTTGAATATTTTGGCCCAGACTATACTCTGCATCCCGAGCCATCCAACATGGAAAATCTAAACACACCCAGGGATCTGGAAAAAATTCGGAGTGCATTACTAGAACAACTTTCCAGGCTTCCCCATGCGCCCAGTGCACCTTTTCAAACAACACCATCAATCATACAAGTTCCTGAAGAGGAAGAGGAGCACATGGATATAAGAGCAAAACCTCGCATATGGAGTGGTGAAGATTTTGATTCTGATAATGATGATGACATGGCTAGTTCAAAGAACTCTGTTTTAACTGCCCAAACGAGGCGTGTTGCAGATGTCATGGACGAAGATTAA 1389 0.4989 MARGERAETESGASLPSVGTDAKKRRVTYFYEPCIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMQVNRPFPAAEADIGRFHSDDYVEFLSSVSPQILSDNSHSHYRQLKRFNVGEDCPVFDGLFDFCSASAGGSIGASVSLNRGDADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGEFFPGTGHIKDIGVGAGKNYSLNVPLNDGLDDETFRGLFRPIIQKVMDVYQPDAVVLQCGADSLSGDRLGCFNLTVKGHADCLRFLRSFNVPLMVLGGGGYTVRNVARCWCYETAVAVGVEPNPKLPYNEYFEYFGPDYTLHPEPSNMENLNTPRDLEKIRSALLEQLSRLPHAPSAPFQTTPSIIQVPEEEEEHMDIRAKPRIWSGEDFDSDNDDDMASSKNSVLTAQTRRVADVMDED 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02003 462 PIRSF HDAC_I_euk 8 461 IPR003084 GO:0004407|GO:0016575
Spst9g02003 462 Pfam Histone deacetylase domain 44 337 IPR023801 -
Spst9g02003 462 SUPERFAMILY Arginase/deacetylase 25 392 IPR023696 -
Spst9g02003 462 Gene3D Histone deacetylase domain 16 405 IPR037138 -
Spst9g02003 462 FunFam Histone deacetylase 23 404 - -
Spst9g02003 462 PRINTS Histone deacetylase superfamily signature 189 204 IPR000286 -
Spst9g02003 462 PRINTS Histone deacetylase superfamily signature 157 180 IPR000286 -
Spst9g02003 462 PRINTS Histone deacetylase superfamily signature 274 284 IPR000286 -
Spst9g02003 462 CDD HDAC_classI 30 339 - -
Spst9g02003 462 PRINTS Histone deacetylase signature 252 270 IPR003084 GO:0004407|GO:0016575
Spst9g02003 462 PRINTS Histone deacetylase signature 176 192 IPR003084 GO:0004407|GO:0016575
Spst9g02003 462 PRINTS Histone deacetylase signature 235 248 IPR003084 GO:0004407|GO:0016575
Spst9g02003 462 PRINTS Histone deacetylase signature 46 63 IPR003084 GO:0004407|GO:0016575
Spst9g02003 462 PRINTS Histone deacetylase signature 114 131 IPR003084 GO:0004407|GO:0016575
Spst9g02003 462 PRINTS Histone deacetylase signature 135 155 IPR003084 GO:0004407|GO:0016575
Spst9g02003 462 PRINTS Histone deacetylase signature 79 97 IPR003084 GO:0004407|GO:0016575
Spst9g02003 462 PANTHER HISTONE DEACETYLASE 2-RELATED 15 352 - -
Spst9g02003 462 MobiDBLite consensus disorder prediction 418 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02003 Spst-Chr9 38389145 38392621 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02003 K06067 - gmx:100801159 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02003 9 38389145 38392621 Spst9g02003 9 38389145 38392621 ECH
Spst3g04522 3 96905352 96908279 Spst9g02003 9 38389145 38392621 PCT