Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04522 ATGGGTATGATGGAAGAGGAGAGTAGCAATAGCAACATAGAAGGTGGAGCTTCGCTACCATCGTCAGGTTCAGACGCCAAGAAGCGAAGCGTCACATACTTCTACGAGCCAACCATCGGCGATTACTACTACGGCCAGGGCCACCCAATGAAGCCGCACCGCATCCGCATGGCTCACAACCTTATCGTTCACTACTCCCTCCACCGCCGAATGGAGATTAACCGCCCTTACCCTGCCTCCCCCGACGACATTCGCCGCTTCCACTCCGATGACTACGTCCACTTCCTCTCCTCAGTCTCCCCTGAGACCCTCGCCGACTCCGCCTTCTCGCGCCAACTCAAGCGCTTCAATGTTGGCGAGGACTGCCCCGTCTTCGACGGCCTCTTCAACTTCTGTCAGGCCTCTGCCGGCGGCTCCATGGGGGCTGCCGTCAAACTCAACCGTGCTGACGCCGATATCGCTATCAACTGGGCCGGCGGCCTCCACCATGCCAAGAAGTCCGAAGCCTCTGGATTCTGTTATGTCAACGACATTGTTCTCGGTATCCTCGAGCTTCTCAAAGTTCACAGGCGTGTTCTGTATGTTGACATTGATGTTCACCACGGTGATGGAGTTGAGGAGGCCTTTTACACCACTGATAGAGTGATGACAGTTTCTTTTCACAAGTTTGGGGACTTTTTCCCAGGCACAGGGCACATCAAAGACGTTGGGGTGGGCTCAGGAAAGAATTATGCTCTCAATGTCCCATTAAACGACGGAATGGATGATGATAATTTTCGTGGTCTGTTTCGAACTGTGATTCATAAAGTCATGGAGGTTTATCAACCTGAGGCAGTTGTTCTTCAATGCGGAGCTGATTCATTATCTGGTGACAGGTTGGGTTGCTTCAACCTGTCTGTGAAAGGTCATGCAGATTGCCTTCGTTTCCTTAGATCTTTCAATGTTCCTTTAATGGTCTTGGGTGGGGGTGGATATACAATTCGAAATGTTGCCCGATGTTGGTGTTATGAGACAGCAGTGGCAGTCGGAGTTGAGCCTGATAACAAGTTGCCTTATAATGAATATTACGAATATTTTGGTCCAGATTATACTCTCTATGTCGATCCAAGCAATATGGAGAATCTAAACACACCCAAGGATATGGAAAAAATAAGGAACACACTACTAGAACAGATCTCCCGACTTCCCCATGCTCCCAGTGTACCTTTTCAGACAACACCACCTACCTTACAAATTCCAGAAGAGGCTGAAGAGGACGTGGATAGAAGACCAATCCTTCGCAAATGGGATGGTGAAGATTATGATTCTGATCCTGATGAAGATGGACAGGCTAATTCCAAGTTCTCAAACGTCACTGCCCATGTGAGGGACATTGCGGATGAAATGGAAGAAGAGAAGTCAGGAGTGCATCCATCATTTTGTTGTTGA 1428 0.4909 MGMMEEESSNSNIEGGASLPSSGSDAKKRSVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMEINRPYPASPDDIRRFHSDDYVHFLSSVSPETLADSAFSRQLKRFNVGEDCPVFDGLFNFCQASAGGSMGAAVKLNRADADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGVGSGKNYALNVPLNDGMDDDNFRGLFRTVIHKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLYVDPSNMENLNTPKDMEKIRNTLLEQISRLPHAPSVPFQTTPPTLQIPEEAEEDVDRRPILRKWDGEDYDSDPDEDGQANSKFSNVTAHVRDIADEMEEEKSGVHPSFCC 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04522 475 PRINTS Histone deacetylase superfamily signature 276 286 IPR000286 -
Spst3g04522 475 PRINTS Histone deacetylase superfamily signature 159 182 IPR000286 -
Spst3g04522 475 PRINTS Histone deacetylase superfamily signature 191 206 IPR000286 -
Spst3g04522 475 PRINTS Histone deacetylase signature 178 194 IPR003084 GO:0004407|GO:0016575
Spst3g04522 475 PRINTS Histone deacetylase signature 83 101 IPR003084 GO:0004407|GO:0016575
Spst3g04522 475 PRINTS Histone deacetylase signature 116 133 IPR003084 GO:0004407|GO:0016575
Spst3g04522 475 PRINTS Histone deacetylase signature 254 272 IPR003084 GO:0004407|GO:0016575
Spst3g04522 475 PRINTS Histone deacetylase signature 137 157 IPR003084 GO:0004407|GO:0016575
Spst3g04522 475 PRINTS Histone deacetylase signature 237 250 IPR003084 GO:0004407|GO:0016575
Spst3g04522 475 PRINTS Histone deacetylase signature 50 67 IPR003084 GO:0004407|GO:0016575
Spst3g04522 475 MobiDBLite consensus disorder prediction 415 433 - -
Spst3g04522 475 Pfam Histone deacetylase domain 48 339 IPR023801 -
Spst3g04522 475 Gene3D Histone deacetylase domain 27 402 IPR037138 -
Spst3g04522 475 FunFam Histone deacetylase 27 406 - -
Spst3g04522 475 MobiDBLite consensus disorder prediction 396 451 - -
Spst3g04522 475 CDD HDAC_classI 34 341 - -
Spst3g04522 475 PANTHER HISTONE DEACETYLASE 2-RELATED 14 354 - -
Spst3g04522 475 PIRSF HDAC_I_euk 10 471 IPR003084 GO:0004407|GO:0016575
Spst3g04522 475 MobiDBLite consensus disorder prediction 1 25 - -
Spst3g04522 475 SUPERFAMILY Arginase/deacetylase 30 394 IPR023696 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04522 Spst-Chr3 96905352 96908279 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04522 K06067 - gmx:100807923 902.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04522 3 96905352 96908279 Spst3g04522 3 96905352 96908279 ECH
Spst3g04522 3 96905352 96908279 Spst9g02003 9 38389145 38392621 PCT