Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01934 ATGGCTACATTGAAACACCCGTCATCGTTTGTCACATTGGTGGCACTTCTAGTGGTGGCTCTTTTCGTGGCTCCAACATCCTCAACATCCAGAAAAACCCTCAAGCACCACCCTTATCCAACAAATGGGTTCCGAGTCATGCTTCGCCACGTTGACTCAGGGAAAAACCTAACCAAACTAGAGCGTGTGCAACACGGGATCAAGCGTGGAAAGAGTAGGCTTCAGAGGCTGAACGCAATGGTGTTGGCAGCTTCGACCGCACCAGATTCTGATCAGTTGGAAGCCCCCGTCCATGCAGGGAATGGAGAATACTTGATGGAGTTAGCCATAGGAACTCCACCAGTGTCTTACCCTGCGGTTTTGGACACTGGCAGTGACCTCATATGGACACAGTGCAAGCCTTGCACACGATGTTACAAGCAACCAACACCCATTTTTGACCCCAAGACGTCCTCTTCGTTTTCCAAGGTCTCATGTGACAGCAGCTTATGCAGTGCCTTGCCTTCATCTACCTGCAGTGATGGGTGTGAGTATCTGTATTCATACGGTGATTATTCAGTTACACAAGGGGTGTTGGCCACTGAGACCTTCACTTTTGGAAAGTCTAAGAAAAAAGTTTCCGTTCACAACATCGGTTTTGGTTGTGGAGAGGATAATGAAGGTGATGGGTTTGAACAAGCCTCGGGGTTGGTTGGGCTTGGACGTGGTCCTTTGTCTTTGGTTTCTCAACTCCACGAACCGAGATTTTCTTATTGTTTGACCCCAATAGATGACACAAAAAAGAGTGTTTTGTTGTTGGGGTCTTCGGAAAAAGTGAAAGATGCAAAAGAAGAGGTGACAACCCCTCTTCTCAAAAATCCTTTGCAACCTTCTTTTTACTACCTTTCTCTCGATGGTATCTCTGTGGGAGACACTAGATTGCCCATTGAGAAGTCCACTTTTGCAGTGGGAAATGATGGGAGTGGAGGTGTGATCATAGACTCTGGCACCACAATTACCTACATTGAACAAAAGGCCTTTGATGAACTAAAAAAAGAGTTCATTTCTCAAACCAAGCTTCCCGTGGACGAAAATACCTCAACTGGGTTGGATCTTTGTTTCTCTCTGCCATCAGATTCAACAGAAGTGGAAATTCCAAAGCTGGTTTTCCACTTCAGTGGTGGAGATTTGGAGCTACCTGCTGAGAACTACATTATTGGTGACTCCAACTTGGGAGTGGCTTGCTTGGCCATGGGTGCTGCCAGTGGAATGTCCATATTCGGGAATGTTCAACAGCAGAACATTTTGGTGAACCATGATCTCCAGAAAGAGACCATTTCTTTCATCCCTACGTCCTGTGATGAGTTGTGA 1350 0.4637 MATLKHPSSFVTLVALLVVALFVAPTSSTSRKTLKHHPYPTNGFRVMLRHVDSGKNLTKLERVQHGIKRGKSRLQRLNAMVLAASTAPDSDQLEAPVHAGNGEYLMELAIGTPPVSYPAVLDTGSDLIWTQCKPCTRCYKQPTPIFDPKTSSSFSKVSCDSSLCSALPSSTCSDGCEYLYSYGDYSVTQGVLATETFTFGKSKKKVSVHNIGFGCGEDNEGDGFEQASGLVGLGRGPLSLVSQLHEPRFSYCLTPIDDTKKSVLLLGSSEKVKDAKEEVTTPLLKNPLQPSFYYLSLDGISVGDTRLPIEKSTFAVGNDGSGGVIIDSGTTITYIEQKAFDELKKEFISQTKLPVDENTSTGLDLCFSLPSDSTEVEIPKLVFHFSGGDLELPAENYIIGDSNLGVACLAMGAASGMSIFGNVQQQNILVNHDLQKETISFIPTSCDEL 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01934 449 FunFam Probable aspartic protease At2g35615 83 267 - -
Spst9g01934 449 Pfam Xylanase inhibitor C-terminal 293 441 IPR032799 -
Spst9g01934 449 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 324 335 IPR001969 GO:0004190|GO:0006508
Spst9g01934 449 CDD pepsin_A_like_plant 103 446 IPR034161 -
Spst9g01934 449 PRINTS Pepsin (A1) aspartic protease family signature 324 335 IPR001461 GO:0004190|GO:0006508
Spst9g01934 449 PRINTS Pepsin (A1) aspartic protease family signature 110 130 IPR001461 GO:0004190|GO:0006508
Spst9g01934 449 Gene3D Acid Proteases 268 449 IPR021109 -
Spst9g01934 449 PANTHER OS07G0603500 PROTEIN-RELATED 55 446 - -
Spst9g01934 449 ProSiteProfiles Peptidase family A1 domain profile. 104 442 IPR033121 -
Spst9g01934 449 FunFam Aspartyl protease family protein 268 449 - -
Spst9g01934 449 Pfam Xylanase inhibitor N-terminal 104 268 IPR032861 -
Spst9g01934 449 Gene3D Acid Proteases 82 267 IPR021109 -
Spst9g01934 449 SUPERFAMILY Acid proteases 97 447 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01934 Spst-Chr9 27786526 27787875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01934 102 449 Miscellaneous Gene Families AT1G77480 27.105 4.54e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01934 - - gmx:100811294 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01934 9 27786526 27787875 Spst9g01934 9 27786526 27787875 ECH
Spst3g01275 3 16203116 16206218 Spst9g01934 9 27786526 27787875 ECH