Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01275 ATGAAGATGAAGATGGGGAAAGTAGAGATGGTTCTTGCGGTGATGGTGCTGTTCAACATGTCTTCTTGTTCAGCTTGGTTTGGTGACACACACAGGAACTCAATTCTCCCAAGTCAAGCCAGGTCATCATCATGTTCAAGGCTATTGAATCCTGCTGGCTCCTCTGTTGTGTTCCCTCTTCATGGCAACGTTTATCCTGTCGGGTTCTATAATGTTACTCTCAATATCGGTCAGCCAGCAAGGCCTTATTTTCTTGATGTGGACACAGGTAGTGATCTCACATGGCTCCAATGTGATGCCCCTTGTACCCATTGCTCTGAGACACCCCATCCACTCTACAGGCCTAGCAATGACTTTGTTCCCTGCAAGGATCCCCTTTGTGCGTCCTTGCAGCCCACTGATGACTACAACTGTGAAAACCCTGATCAATGTGACTATGAAATTAATTATGCAGATCAGTACTCAACCTTCGGTGTGCTTCTCAATGATGTCTACCTTCTTAACTTTACCAATGGAGTTCAACTTAAAGTTCGGATGGCACTGGGATGTGGATATGATCAAGTCTTTGCACCTTCTTCTTACCATGCCTTAGATGGAATACTTGGCCTTGGAAGAGGAAAGACCAGCTTGATATCCCAGCTGAATAGTCAGGGCTTGGTAAGAAATGTGATTGGACACTGTTTAAGTTCACAAGGAGGGGGGTATATCTTCTTTGGAAATGCATATGATTCTGCTCGAGTGACATGGACTCCAATTTCATCTGTAGATTCCAAACATTACTCTGCAGGGCCAGCTGAACTTGTTTTTGGAGGGAGGAAAACTGGGGTTGGAAGTCTGACTGCGGTTTTTGACACTGGGAGTTCTTATACTTACTTCAACTCTCATGCTTACCAAGCATTACTTTCTTGGCTGAAGAAGGATTTAACTGGAAAGCCCCTGAAAGCAGCACCTGATGATCAGACTTTACCTTTCTGCTGGCACGGTAGAAGACCTTTCAAAAGCATACGTGAAGTCAGGAAATACTTCAAGCCCGTGGCACTTAGTTTCACCAATGGTGGAAGAGTTAAAGCTCAATTTGAGATCGCTCCTGAAGCTTATCTTATAATATCAAACCTGGGAAATGTTTGTCTGGGCATTCTAAGCGGCTCTGAAATAGGTTTGGAGGAACTGAACGTAATTGGAGACATATCCATGCAAGACAAAGTGATGGTTTTCGAAAATGAGAAGATGTTGATTGGTTGGGGACCTGCAGATTGCAGCCGTGTTCCAAAGTCTAGAGATTTCAGTATTTGA 1293 0.4416 MKMKMGKVEMVLAVMVLFNMSSCSAWFGDTHRNSILPSQARSSSCSRLLNPAGSSVVFPLHGNVYPVGFYNVTLNIGQPARPYFLDVDTGSDLTWLQCDAPCTHCSETPHPLYRPSNDFVPCKDPLCASLQPTDDYNCENPDQCDYEINYADQYSTFGVLLNDVYLLNFTNGVQLKVRMALGCGYDQVFAPSSYHALDGILGLGRGKTSLISQLNSQGLVRNVIGHCLSSQGGGYIFFGNAYDSARVTWTPISSVDSKHYSAGPAELVFGGRKTGVGSLTAVFDTGSSYTYFNSHAYQALLSWLKKDLTGKPLKAAPDDQTLPFCWHGRRPFKSIREVRKYFKPVALSFTNGGRVKAQFEIAPEAYLIISNLGNVCLGILSGSEIGLEELNVIGDISMQDKVMVFENEKMLIGWGPADCSRVPKSRDFSI 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01275 430 Pfam Xylanase inhibitor C-terminal 277 414 IPR032799 -
Spst3g01275 430 PRINTS Pepsin (A1) aspartic protease family signature 391 406 IPR001461 GO:0004190|GO:0006508
Spst3g01275 430 PRINTS Pepsin (A1) aspartic protease family signature 281 292 IPR001461 GO:0004190|GO:0006508
Spst3g01275 430 PRINTS Pepsin (A1) aspartic protease family signature 76 96 IPR001461 GO:0004190|GO:0006508
Spst3g01275 430 Gene3D Acid Proteases 45 238 IPR021109 -
Spst3g01275 430 Gene3D Acid Proteases 239 424 IPR021109 -
Spst3g01275 430 SUPERFAMILY Acid proteases 62 422 IPR021109 -
Spst3g01275 430 PANTHER ASPARTYL PROTEASES 29 413 IPR001461 GO:0004190|GO:0006508
Spst3g01275 430 FunFam Aspartyl protease family protein 46 240 - -
Spst3g01275 430 FunFam Aspartic proteinase Asp1 isoform A 243 423 - -
Spst3g01275 430 Pfam Xylanase inhibitor N-terminal 70 240 IPR032861 -
Spst3g01275 430 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 281 292 IPR001969 GO:0004190|GO:0006508
Spst3g01275 430 ProSiteProfiles Peptidase family A1 domain profile. 70 415 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01275 Spst-Chr3 16203116 16206218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01275 40 425 Miscellaneous Gene Families AT1G44130 51.282 1.78e-146 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01275 - - gmx:100783051 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01275 3 16203116 16206218 Spst3g01275 3 16203116 16206218 ECH
Spst3g01275 3 16203116 16206218 Spst9g01934 9 27786526 27787875 ECH