Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01833 ATGGCGGCCGAGCTAGTCAATGGTGCAACAAGCGAGAAACTGGCTGAAACTGATTGGACAAAAAATATTGAAATCTGTGAGTTAGTTGCTCATGATAAAAGGCAAGCTCGAGATGTTGTTAAAGCTATTAAAAAGAGACTAGGAAGCAAACAACCCAATGCTCAACTTTATGCTGTCATGTTGTTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAGGTGATTGATAATGGAATTATTCCTGTTCTAGTAAAAATTGTGAAAAAAAAGTCTGACTTGCCTGTGAGAGAGAGGATATTTCTCCTATTAGATGCCACACAAACATCCCTTGGTGGTGCATCTGGAAAGTTTCCACAGTATTATAATGCATATTATGAGTTGGTGAGTGCCGGAGTGCAGTTTTCTCAAAGGGATCAAGTGGCTCAATCAAACCATCCTAGTTCACAACCTAATAGGACTACTAATGTGACAAACTGGGAGCAGGCCGCACCTAGACATGAAGTAGTTGCTCAGCAAGCTGAGTCCCAGACTGTCCCTGAATCAAGCATTATTCAAAAGGCTAGCAATGCATTAGAAGTACTAAAAGAGGTCCTGGATGCTGTTGATGCTCAAAATCCTCAGGGAGCAAGGGATGAATTCACCCTTGACCTTGTAGAACAATGCTCCTTTCAAAAGCAAAGGGTTATGCATCTTGTGATGGCTTCTCGAGATGAAAGGATAGTTTCTAGAGCAATTGAATTGAATGAGCAACTTCAGAAAGTTCTTGCAAGACATGATGACCTTCTTGCTGGCAGAGCTACAATAACGGCTACTCGGTTTTACCATGAGGAAGCAGATGAGGAGGAGGAGCCTGAACAGTTAGTCCGGAGATTACGTAAGGGAAAGGCTTGTGCAAGACCTGAAGATGAGGAGACTGAAACTGACATCCCTCCCCTGGGTTTACTTGGAGAGAGACTCAATCGCCCACTAATACGACCACTAACAATAGAGCCACCATCTCGTGATGCTGAACCTCGATCTCCACCTGTTGTGATCCCTTCATCTCGAGAAGCTGATACTCGGTTTCCACCTGTTGTGATCCCACCTCTGCGGCCGAAGCAGAACGGGGATGGTCCCCATCATGTGGCAATTCCACCACCACCTGCAAAGCATGTTGAAAGAGAAAAGTTTTTTCAGGAAAACAAGGATGGAACTAATTTGTCTGGCCATATGAGAGGCCTCTCCTTGCATAGTCGTAATGGCAGCAGCTCTCACAGTGGAAGCTTTGATTTTAGTGAATGA 1290 0.4403 MAAELVNGATSEKLAETDWTKNIEICELVAHDKRQARDVVKAIKKRLGSKQPNAQLYAVMLLEMLMNNIGEHIHEQVIDNGIIPVLVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYNAYYELVSAGVQFSQRDQVAQSNHPSSQPNRTTNVTNWEQAAPRHEVVAQQAESQTVPESSIIQKASNALEVLKEVLDAVDAQNPQGARDEFTLDLVEQCSFQKQRVMHLVMASRDERIVSRAIELNEQLQKVLARHDDLLAGRATITATRFYHEEADEEEEPEQLVRRLRKGKACARPEDEETETDIPPLGLLGERLNRPLIRPLTIEPPSRDAEPRSPPVVIPSSREADTRFPPVVIPPLRPKQNGDGPHHVAIPPPPAKHVEREKFFQENKDGTNLSGHMRGLSLHSRNGSSSHSGSFDFSE 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01833 429 SUPERFAMILY ENTH/VHS domain 4 137 IPR008942 -
Spst9g01833 429 Pfam VHS domain 5 112 IPR002014 GO:0035091|GO:0043130
Spst9g01833 429 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Spst9g01833 429 Gene3D - 176 274 IPR038425 -
Spst9g01833 429 PANTHER TOM1-LIKE PROTEIN 1 415 IPR044836 GO:0035091|GO:0043130|GO:0043328
Spst9g01833 429 MobiDBLite consensus disorder prediction 394 429 - -
Spst9g01833 429 Coils Coil 187 207 - -
Spst9g01833 429 MobiDBLite consensus disorder prediction 331 361 - -
Spst9g01833 429 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Spst9g01833 429 CDD GAT_GGA-like_plant 186 264 - -
Spst9g01833 429 CDD VHS 2 130 - -
Spst9g01833 429 Pfam GAT domain 192 267 IPR004152 GO:0035091|GO:0043130
Spst9g01833 429 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Spst9g01833 429 MobiDBLite consensus disorder prediction 398 429 - -
Spst9g01833 429 FunFam TOM1-like protein 2 1 147 - -
Spst9g01833 429 Gene3D - 2 136 IPR008942 -
Spst9g01833 429 SUPERFAMILY GAT-like domain 144 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01833 Spst-Chr9 22515034 22519449 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01833 - - pvu:PHAVU_009G157500g 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01833 9 22515034 22519449 Spst9g01833 9 22515034 22519449 ECH
Spst3g01244 3 15929340 15935162 Spst9g01833 9 22515034 22519449 PCT