Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01244 ATGAAAGCTCAGGGAAACGACAACTGTGTTGAAAAGGTACCACATCGAACCATACCCGACACGTGGATCATCTACCACCGAAAAGGTAAAAGGATGAAGCACATGCGAGTGAACAAAGGAGAGGGTAAGGTTATCAAATTGCAGCTTCTCCTTGGAAAAGAAGATTTACTTTGGGAGAGCAAGGACAGTGACAGGTCTCGTGGCGGTGTTGTAAAAAAAAAAATGGCAGCTCTGGTCATTGCTGCAACATGTGAGAAACTGGCTGAAACTGATTGGATGAAAAATATTGAAATCTGTGAATTAGTCGCTCATGATCAACGGCAGGCTAGAGATGTCGTTAAAGCTATAAAAAAGAGGCTGGGTTACAAGAACCCTAACATTCAACTTTATGCAGTAGCATTGCTAGAAATGTTGATGAACAATATTGGAGATCATGTTCACCAGCAGGTGATTGATACAGGAATTATCCCTATTCTTGTAAAAATTGTGAAGAAAAAATCAGATTTGCCTGTAAGGGAGCGGATATTTCTGCTACTAGATGCCACACAAACATCCCTTGGTGGTGCTTCTGGAAAGTTTCCACAGTATTATAACGCGTATTATGATTTGGTGAGTGCTGGGGTGCAGTTTCCTCAAAGGAATCAAGTAACCCAATCAAATTGTCCTCGTTCACAACTTAATGGGATTAACAATGTACCATACGCAGAGCAGGACCCTCCTAGACATCAGCCAGCAGAGTCACAAACTGTTACTGAATCTAGCATTATTCAAAAGGCTAGTAATGCGTTAGAAGTTTTAAAAGAAGTCCTTGATGCTATTAATACCCAACACCCTCAGGCTGCAAAAGATGAATTCACTCTTGACCTTGTTGAACAGTGTTCATTTCAGAAGCAAAGGGTAATGCATCTTGTGATGACTTCTTGTGATGAGAGGATAGTTTCTCAAGCAATTGAATTAAACGAGCAACTCCAGAAAGTTCTTACAAGACATGATGGACTTCTTTCGGGCAGAGCCATGACAATAGCCAATCACTTGGACTGTGAAGAAGAAGAGGAGGAAGAAGAACCAGAACAGTTATTCCGGAGATTACGCAAAGGAAAGGCTTGTGCAAGGCCTGAAGATGAAGAAAGTGAACCTGAGTTGTCTCACTTTGGTTTGGTTGAAGAGAGACTCAACCGTCCCTTAATAAGACCTCTATCTTTGGAGCCATCATCAAGAGAAGCTAATACTTGTCCTGCACCTGCTGTGATTCCTCCTCACATGGCAATTCCACCACCACCTTCAAAACACATTGAGAGGGAAAGATATTTCCAGGAAAATAAAAAGGATGGTGCTACTTTGGCTGGCCACTTGAGAGGCCTTTCCTTGCATAGTCACAATGGCAGCAGCTCTCACAGTGGAAGCTTTGATTTTAGTGATTGA 1422 0.4205 MKAQGNDNCVEKVPHRTIPDTWIIYHRKGKRMKHMRVNKGEGKVIKLQLLLGKEDLLWESKDSDRSRGGVVKKKMAALVIAATCEKLAETDWMKNIEICELVAHDQRQARDVVKAIKKRLGYKNPNIQLYAVALLEMLMNNIGDHVHQQVIDTGIIPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYNAYYDLVSAGVQFPQRNQVTQSNCPRSQLNGINNVPYAEQDPPRHQPAESQTVTESSIIQKASNALEVLKEVLDAINTQHPQAAKDEFTLDLVEQCSFQKQRVMHLVMTSCDERIVSQAIELNEQLQKVLTRHDGLLSGRAMTIANHLDCEEEEEEEEPEQLFRRLRKGKACARPEDEESEPELSHFGLVEERLNRPLIRPLSLEPSSREANTCPAPAVIPPHMAIPPPPSKHIERERYFQENKKDGATLAGHLRGLSLHSHNGSSSHSGSFDFSD 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01244 473 MobiDBLite consensus disorder prediction 456 473 - -
Spst3g01244 473 ProSiteProfiles VHS domain profile. 82 211 IPR002014 GO:0035091|GO:0043130
Spst3g01244 473 Pfam VHS domain 74 184 IPR002014 GO:0035091|GO:0043130
Spst3g01244 473 ProSiteProfiles GAT domain profile. 247 335 IPR004152 GO:0035091|GO:0043130
Spst3g01244 473 SUPERFAMILY GAT-like domain 247 336 - -
Spst3g01244 473 MobiDBLite consensus disorder prediction 438 473 - -
Spst3g01244 473 Pfam GAT domain 261 335 IPR004152 GO:0035091|GO:0043130
Spst3g01244 473 SMART VHS_2 75 207 IPR002014 GO:0035091|GO:0043130
Spst3g01244 473 Coils Coil 256 276 - -
Spst3g01244 473 CDD VHS 75 203 - -
Spst3g01244 473 Gene3D - 245 343 IPR038425 -
Spst3g01244 473 CDD GAT_GGA-like_plant 255 331 - -
Spst3g01244 473 SUPERFAMILY ENTH/VHS domain 77 213 IPR008942 -
Spst3g01244 473 Gene3D - 68 209 IPR008942 -
Spst3g01244 473 PANTHER TOM1-LIKE PROTEIN 76 379 IPR044836 GO:0035091|GO:0043130|GO:0043328
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01244 Spst-Chr3 15929340 15935162 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01244 - - gmx:100802949 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01244 3 15929340 15935162 Spst3g01244 3 15929340 15935162 ECH
Spst3g01244 3 15929340 15935162 Spst9g01833 9 22515034 22519449 PCT