Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01829 ATGGCTGAAGAAGTTTCAAAGACAAGCACAACTCAAGAGGAAGTGGCGGTCGCTGACGTGGCACCTACTGAGAAACCAGACAACAACGTTGTTGTTTCCCTGGAGAAAGACGCACCCCAAGAAGAAGAAAAAGCATCCCCGGAGAAGGAGAACATTCCTGAAACTGAGACGGAGGTTTCCAAAGATAACATTCCGGAATCAGGTTCGTTCAAGGAAGAAAGCACCATTGTCTCCGACCTACCGGAAACCGAGAAAAAGGCATTGCAAGAACTCAAACAACTCATTCAGGAAGCACTCAACAAACACGAGTTTTCTGCGCCTCAGAGTAACCACCCTCCCAAAGATGAAAAATCCGAAGATGCCACCGACTACAAGGAAGAACAAAAGCGCGTGGAGGAAGAGAAGGAACACGTTGTTCATGCTGATGCTGCTGAGGTGGTAGAATCGACAGAAAAAGAAGCTGCGGAAGTGAAGGAAACTGAGGTTGTTGACGAAAAAGTGGCTGTTACTGATGCTGCTTCTGTTGTGGAGGATGGAGCCAAAACGGTAGAGGCGATTGAGGAGAGCGTTGTATCTGTGACTGTGTTAGAGGAAGAAGCGAAGGTGGAAGCTGCTTCTGCTTCCCCCGAAGAGATTTCGATTTGGGGAGTGCCGCTTCTTGCTGATGAAAGGAGCGATGTGATTCTGCTGAAGTTTCTTCGTGCGAGGGACTTCAAGGTGAAGGATGCGTTTGCGATGATAAAGGGGACGATTCGGTGGAGGAAGGAGTTCGGGATGGAGGAGTTGTTGGAGGAGGATTTGGGGGATGATTTGGAGAAGGCGGTGTACATGCATGGGTTTGACAAGGAGGGTCACCCTGTGTGTTATAACATCTATGGGGAGTTTCAGAACAAGGAATTGTACAAGAAGAGTTTCTCTGATGAGGAGAAGAGGCACAGATTCCTCAGGTGGAGGATTCAGTTCCTGGAGAAGAGTATCAGGAGGCTTAATTTTACCCCTGGAGGGATAAGCACCATTGTTCAAGTCAATGATCTCAAGAACTCTCCTGGACCTGCCAAGTGGGAGCTTAGACAGGCTACCAAACAGGCCCTGCAGTTGCTTCAGGATAACTATCCTGAGTTTGTAGCCAAACAGGTGTTTATCAATGTGCCATGGTGGTATTTGGCAGTGAACAGGATGATAAGCCCTTTTCTTACTCAGAGAACCAAAAGCAAGTTTGTCTTTGCTGGCCCTTCCAAATCAGCTGAGACTCTTCTGAGATACATTGCTGCGGAGCAACTTCCGGTCAAGTATGGTGGACTAAGCAAAGATGGGGAATTCGGAATTTCCGATGCTGTTACAGAAATTACAGTGAGGCCAGCAGCAAAACATACTGTGGAGTTTCCAGTTACTGAGAACTCCCTACTGTCTTGGGAACTCAGAGTAATAGGGTGGGACGTAAGCTATGGTGCAGAGTTTGTGCCAAATTCAGAGGGAAGCTATACTGTGATCATCCAGAAGGCTAGAAAGGTTGCTTCATCAGAAGAACCGGTGCTTTCCAACAATTATAAAATTGGTGAACCTGGGAAAGTGGTTCTCACTATTGACAACCAAAGCTCTAAGAAGAAGAAACTCTTGTACCGCTTGAAGGTCAAGCCCTCCTCTTCTGATTGA 1653 0.4719 MAEEVSKTSTTQEEVAVADVAPTEKPDNNVVVSLEKDAPQEEEKASPEKENIPETETEVSKDNIPESGSFKEESTIVSDLPETEKKALQELKQLIQEALNKHEFSAPQSNHPPKDEKSEDATDYKEEQKRVEEEKEHVVHADAAEVVESTEKEAAEVKETEVVDEKVAVTDAASVVEDGAKTVEAIEESVVSVTVLEEEAKVEAASASPEEISIWGVPLLADERSDVILLKFLRARDFKVKDAFAMIKGTIRWRKEFGMEELLEEDLGDDLEKAVYMHGFDKEGHPVCYNIYGEFQNKELYKKSFSDEEKRHRFLRWRIQFLEKSIRRLNFTPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKDGEFGISDAVTEITVRPAAKHTVEFPVTENSLLSWELRVIGWDVSYGAEFVPNSEGSYTVIIQKARKVASSEEPVLSNNYKIGEPGKVVLTIDNQSSKKKKLLYRLKVKPSSSD 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01829 550 Pfam CRAL/TRIO domain 273 433 IPR001251 -
Spst9g01829 550 ProSiteProfiles GOLD domain profile. 443 544 IPR009038 -
Spst9g01829 550 SUPERFAMILY CRAL/TRIO N-terminal domain 77 266 IPR036273 -
Spst9g01829 550 MobiDBLite consensus disorder prediction 77 91 - -
Spst9g01829 550 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 444 546 IPR036598 -
Spst9g01829 550 Coils Coil 140 160 - -
Spst9g01829 550 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 264 439 IPR001251 -
Spst9g01829 550 PANTHER PATELLIN-1 38 547 IPR044834 GO:0008289
Spst9g01829 550 MobiDBLite consensus disorder prediction 36 68 - -
Spst9g01829 550 CDD SEC14 270 434 IPR001251 -
Spst9g01829 550 PRINTS Cellular retinaldehyde-binding protein signature 228 250 - -
Spst9g01829 550 PRINTS Cellular retinaldehyde-binding protein signature 391 410 - -
Spst9g01829 550 SMART CRAL_TRIO_N_2 225 250 IPR011074 -
Spst9g01829 550 Gene3D GOLD domain 449 545 - -
Spst9g01829 550 SMART sec14_4 269 436 IPR001251 -
Spst9g01829 550 MobiDBLite consensus disorder prediction 1 139 - -
Spst9g01829 550 Gene3D - 165 448 IPR036865 -
Spst9g01829 550 MobiDBLite consensus disorder prediction 1 16 - -
Spst9g01829 550 Pfam CRAL/TRIO, N-terminal domain 208 248 IPR011074 -
Spst9g01829 550 SUPERFAMILY CRAL/TRIO domain 275 436 IPR036865 -
Spst9g01829 550 Coils Coil 114 134 - -
Spst9g01829 550 MobiDBLite consensus disorder prediction 108 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01829 Spst-Chr9 22449451 22452492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01829 229 428 Acyl Lipid Metabolism Gene Families AT1G55840 28.704 8.12e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01829 - - gmx:100805585 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01829 9 22449451 22452492 Spst9g01829 9 22449451 22452492 ECH
Spst3g01241 3 15899313 15902368 Spst9g01829 9 22449451 22452492 PCT