Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01241 ATGGCTGAGGAGGCTCCAAATCAAGCACCACCTTCTCAAGAGTCCGTGGTGCAAGTGGAGGAAGTGGTGCTAACTGATGTTCCTCATCCTGCAGACAAAACATCACCACCACCACCACCACCACCACCACCACCACCAACAAGTGTTCCTGTTGAGAGAGATTCACCACCACAACCTGAGTCTGAGGCGCCGGAGAAGAAGCCCGTTGAGGAAACCGTCACTCTCGAGACTCATCTCTCCAAACCCAATAACGCTGATGACAACAGCAATGATGACAAAATCCCTGAATTCAAGGAAGAAAGCACCAAACTTTCTGACCTCTCAGAAAACCAAAACAAGGCACTCCAAGACCTCAAGAAGCTCGTTCAAGAAGCTCTCAACAACCACGAGTTTTCCTCCAAAGAAGAAAAAAAGACACCACCACCAACGGCTTCAACTGCTGACAAGGAAGAGCAACAGCAGCAGCAGCAACAAGAAGAAGCTGTGACTGAAGCTAAAACTGATGCTGCCCCAGAGAAAACTGAAGAAGAACAAGTTGAAACGAAGAAAGAGGAACAAGGCGAAAAAGAAGAAGAGAAGAAGGAGGAAGTGAAGGAAACGAAGGAAGAAGCTGTTGTGGATGATGATGGAGCAAAAACTGTGGAGGCCATCGAAGAGACCGTTGTTGCTGTCGCTTCTTCTGTTCAGCCTCAAGCTGAAGAGAAAGCTCCTGGAACGGAGGCCAAAGAGGAAGCTTCAACGCCACTTCCTCCTGAAGTAGTTTCCATTTGGGGGGTGCCACTTCTTGCAGATGAGAGAAGCGATGTGATTCTTTTGAAGTTTCTGCGCGCGAGAGAGTTCAAAGTGAAGGAGGCGTTCACCATGCTGAAGAACACGATCCGGTGGAGGAAGGAGTTTGGGATGGAAGAGCTGATGGAGGAGAAGCTGGGGGATGAGTTGGAGAAGGTGGTGTTCATGCATGGCTTTGATAAGGAGGGCCACCCCGTGTGTTACAACATATATGGGGAGTTCCAGAACAAGGAGTTGTACAGGAAGACTTTTTCTGATGAGGAGAAGAGGCAGAAGTTCCTCAGGTGGAGAATTCAATTCCTGGAAAAGAGTATAAGGAAGTTGGATTTCAACCCTGGTGGCATTTGCACCATTGTTCAAGTCAATGATCTCAAGAACTCTCCTGGACCTGCCAAGTGGGAACTAAGACAAGCCACCAAAAATGCCCTACAATTGCTTCAAGACAATTACCCTGAATTTGTAGCCAAACAGGTGTTCGTTAATGTGCCATGGTGGTACCTGGCAGTGAATAGGATGATAAGCCCTTTTCTCACTCAAAGGACTAAGAGTAAGTTTGTCTTTGCTGGGCCTTCCAAATCAACGGAAACCCTTTTGAGATACATAGCTCCGGAGCAGCTTCCGGTGAAGTACGGTGGATTAAGCAAAGATGGGGAGTTCGGAAACACAGATGCTGTTACAGAAATCACAGTGAGACCCGCAGCAAAGCATACTGTGGAATTTTCAGTTTCTGAGAACTGTTTACTCTCTTGGGAGCTGAGAGTAATAGGGTGGGAAGTAAGCTATGGTGCAGAATTTGTGCCAGACTCAGAAGGAAGCTATACAGTAATTGTTCAGAAGGCTAGAAAGGTTGGCTCATCAGAAGAACCAGTCCTTTGCAACAGTTTTAAGGTTGGTGAACCTGGAAAAGTTGTTCTCACGATTGACAACACAAGCTCCAAGAAGAAGAAGCTATTGTACCGCTTGAAGACCAAACCTTCCCCCTCAGACTAG 1779 0.4716 MAEEAPNQAPPSQESVVQVEEVVLTDVPHPADKTSPPPPPPPPPPPTSVPVERDSPPQPESEAPEKKPVEETVTLETHLSKPNNADDNSNDDKIPEFKEESTKLSDLSENQNKALQDLKKLVQEALNNHEFSSKEEKKTPPPTASTADKEEQQQQQQQEEAVTEAKTDAAPEKTEEEQVETKKEEQGEKEEEKKEEVKETKEEAVVDDDGAKTVEAIEETVVAVASSVQPQAEEKAPGTEAKEEASTPLPPEVVSIWGVPLLADERSDVILLKFLRAREFKVKEAFTMLKNTIRWRKEFGMEELMEEKLGDELEKVVFMHGFDKEGHPVCYNIYGEFQNKELYRKTFSDEEKRQKFLRWRIQFLEKSIRKLDFNPGGICTIVQVNDLKNSPGPAKWELRQATKNALQLLQDNYPEFVAKQVFVNVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSTETLLRYIAPEQLPVKYGGLSKDGEFGNTDAVTEITVRPAAKHTVEFSVSENCLLSWELRVIGWEVSYGAEFVPDSEGSYTVIVQKARKVGSSEEPVLCNSFKVGEPGKVVLTIDNTSSKKKKLLYRLKTKPSPSD 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01241 592 MobiDBLite consensus disorder prediction 225 248 - -
Spst3g01241 592 MobiDBLite consensus disorder prediction 85 106 - -
Spst3g01241 592 SMART sec14_4 311 478 IPR001251 -
Spst3g01241 592 MobiDBLite consensus disorder prediction 145 163 - -
Spst3g01241 592 Coils Coil 172 203 - -
Spst3g01241 592 MobiDBLite consensus disorder prediction 58 74 - -
Spst3g01241 592 MobiDBLite consensus disorder prediction 165 211 - -
Spst3g01241 592 MobiDBLite consensus disorder prediction 31 53 - -
Spst3g01241 592 MobiDBLite consensus disorder prediction 1 211 - -
Spst3g01241 592 Pfam CRAL/TRIO domain 315 475 IPR001251 -
Spst3g01241 592 SUPERFAMILY CRAL/TRIO N-terminal domain 103 307 IPR036273 -
Spst3g01241 592 ProSiteProfiles GOLD domain profile. 485 586 IPR009038 -
Spst3g01241 592 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 306 481 IPR001251 -
Spst3g01241 592 CDD SEC14 312 476 IPR001251 -
Spst3g01241 592 SMART CRAL_TRIO_N_2 267 292 IPR011074 -
Spst3g01241 592 Gene3D - 238 298 - -
Spst3g01241 592 Gene3D - 301 491 IPR036865 -
Spst3g01241 592 Gene3D GOLD domain 492 586 - -
Spst3g01241 592 Pfam CRAL/TRIO, N-terminal domain 256 291 IPR011074 -
Spst3g01241 592 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 487 585 IPR036598 -
Spst3g01241 592 PRINTS Cellular retinaldehyde-binding protein signature 270 292 - -
Spst3g01241 592 PRINTS Cellular retinaldehyde-binding protein signature 433 452 - -
Spst3g01241 592 PANTHER PATELLIN-1 155 589 IPR044834 GO:0008289
Spst3g01241 592 Coils Coil 104 135 - -
Spst3g01241 592 SUPERFAMILY CRAL/TRIO domain 316 478 IPR036865 -
Spst3g01241 592 SUPERFAMILY Formin homology 2 domain (FH2 domain) 36 46 - -
Spst3g01241 592 MobiDBLite consensus disorder prediction 129 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01241 Spst-Chr3 15899313 15902368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01241 271 470 Acyl Lipid Metabolism Gene Families AT1G55840 28.241 3.33e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01241 - - gmx:100788197 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01241 3 15899313 15902368 Spst3g01241 3 15899313 15902368 ECH
Spst3g01241 3 15899313 15902368 Spst9g01829 9 22449451 22452492 PCT