Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01685 ATGTACGTCGTAAAGAGGGACGGACGCCAAGAATCGGTGCACTTCGACAAAATAACCGCGCGCCTCAAGAAACTCAGTTATGGCTTGAGCACCGATCACTGCGACGCCGTTCTCGTCTCTCAGAAAGTCTGCGCCGGCGTCTACAAAGGCGTTACTACCACTCAACTCGACGAGCTGGCCGCCGAAACCGCCGCCGCCATGACCGCATACCATCCCGATTACGCTTGTTTGGCTGCTAGGATTGCCGTTTCGAATCTCCACAAAAACACCAAGAAGTCTTTTTCGGAGACGATCAAGATCATGTACTACCATTTTAATGAGAGGTCTGGGTTGAAGGCTCCAATGATCGCTGATGATGTTTATGAAATAATTATGAAGAATGCTTCTCGCTTGGACAGCGAGATAATCTATGACAGGGACTTCGACTATGATTATTTTGGGTTCAAAACCCTAGAGAGGTCTTACCTATTGAAGGTTCAAGGGAAGGTTGCGGAAAGGCCACAACACATGTTGATGAGAGTCGCGGTTGGGATTCACAAGGATGACATAGAATCTGCTGTCAAAACTTACCACATGATGTCTCAACGATGGTTCACCCATGCATCTCCGACTCTTTTCAATGCTGGAACTCCTAGGCCTCAACTGAGTAGCTGCTTCCTTGTCTGCATGAATGATGATAGCATAGAGGGGATATATGAAACGCTGAAAGAGTGTGCTATCATTAGCAAATCAGCTGGAGGAATTGGTGTATCAGTCCACAACATTCGTGCTACGGGCAGTTATATTCGTGGGACAAATGGGACGTCCAACGGCCTTGTTCCAATGTTACGCGTGTTCAATGATACTGCCCGCTATGTTGATCAAGGGGGAGGCAAGAGGAAAGGTGCATTTGCTATGTACTTGGAGCCATGGCATGCTGATATATTTGAATTCTTGGATTTAAGAAAACATCATGGAAAGGAGGAACATCGTGCACGGGATCTGTTTTACGCTCTTTGGGTGCCTGATCTCTTTATGGAAAGAGTCCAGAGTAATGAACAATGGTCTTTGTTTTGTCCCAATGAAGCACCAGGTTTGGCAGATTGTTGGGGTGAGGAATTTGAGGCGCTTTATAATCGATATGAAAGAGAAGGAAAAGCAAAGAAGGTTGTCCAGGCACAGAGCCTATGGTTTGAAATTCTGAAGTCACAGATAGAAACCGGAACCCCTTATATGCTATTTAAGGATACTTGCAATAGGAAAAGCAACCAACAGAATTTGGGCACAATCAAATCGTCAAACTTGTGTACTGAGATAATTGAGTATTCAAGTCCAACTGAAACTGCTGTGTGCAATCTGGCATCAATTGCACTACCGCGATATGTAAGAGAGAAGGGTGTCCCAGTGGAATCTCATCCATCTAAGCTTGTTGGAAGCACAGACTCTCGGAATCGATATTTTGACTTTGATAAACTAGCAGAGATTACTGCGGTGGTCACAACAAACCTGAACAAAGTGATTGATGTTAATTACTACCCAATTGAAAATGCAAAACGGTCGAACTTACGGCACAGACCCATTGGTATTGGAGTACAGGGTCTTGCTGATACTTTCATACTGCTTGGTATGGCATTTGATTCACCCGAGGCTCAGCAATTAAACAAGCAGATATTTGAGACTATATACTATCATGCACTAAAAACTTCATCTGATTTGGCTGCAAAAGAAGGTCCTTATGAGACATATGGTGGTAGTCCTGTAAGCAAGGGAATTCTCCAGCCAGACATGTGGGGTGTGACGCCCTCAGAACGTTGGGATTGGGTTGCACTTCGGGAGATGATATCAAAGAATGGTGTGAGAAATTCACTTCTCATGGCTCCTATGCCTACTGCATCCACTAGCCAGATTCTTGGAAATAATGAGTGTTTTGAGCCATATACATCAAATATCTACAGTCGTAGAGTTTTAAGTGGTGAGTTTGTTGTTGTCAACAAGCATCTTCTTCATGACTTGACTGAAATGGGACTGTGGTCTCCTACATTAAAGAATAAGATTATCTATGAAGATGGCTCTGTTCAGAAAATTCCGGAAATACCACATGAACTGAAGACTATATACAAAACTGTTTGGGAGATTAAACAAAGGACATTGGTAGATATGGCTGTTGATCGAGGATGTTACATAGACCAGAGCCAAAGCTTAAATATTCACATTGATCAGCCCAACTTCGGAAAGCTGACTTCTTTGCATTTCTATGCATGGTCCAAGGGTCTAAAGACTGGAATGTATTATCTTCGTTCACGAGCTGCAGCAGATGCTATCAAGTTCACCGTTGATACCACTGCTATCAAAGAAAATTCTGATGAAATGCAGGAAAAATACAACGTGGAGCAAGATGATAATGCAAAAATGGCACAAATGGTGTGCTCTTTAACAAACCGTGAAGAATGCTTGGCTTGTGGTAGTTGA 2448 0.4342 MYVVKRDGRQESVHFDKITARLKKLSYGLSTDHCDAVLVSQKVCAGVYKGVTTTQLDELAAETAAAMTAYHPDYACLAARIAVSNLHKNTKKSFSETIKIMYYHFNERSGLKAPMIADDVYEIIMKNASRLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVAERPQHMLMRVAVGIHKDDIESAVKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMNDDSIEGIYETLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGLVPMLRVFNDTARYVDQGGGKRKGAFAMYLEPWHADIFEFLDLRKHHGKEEHRARDLFYALWVPDLFMERVQSNEQWSLFCPNEAPGLADCWGEEFEALYNRYEREGKAKKVVQAQSLWFEILKSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYSSPTETAVCNLASIALPRYVREKGVPVESHPSKLVGSTDSRNRYFDFDKLAEITAVVTTNLNKVIDVNYYPIENAKRSNLRHRPIGIGVQGLADTFILLGMAFDSPEAQQLNKQIFETIYYHALKTSSDLAAKEGPYETYGGSPVSKGILQPDMWGVTPSERWDWVALREMISKNGVRNSLLMAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNKIIYEDGSVQKIPEIPHELKTIYKTVWEIKQRTLVDMAVDRGCYIDQSQSLNIHIDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVDTTAIKENSDEMQEKYNVEQDDNAKMAQMVCSLTNREECLACGS 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01685 815 Pfam ATP cone domain 1 89 IPR005144 -
Spst9g01685 815 SUPERFAMILY R1 subunit of ribonucleotide reductase, N-terminal domain 6 214 IPR008926 -
Spst9g01685 815 NCBIfam ribonucleoside-diphosphate reductase subunit alpha 145 761 IPR013346 -
Spst9g01685 815 CDD RNR_I 167 760 - -
Spst9g01685 815 FunFam Ribonucleoside-diphosphate reductase 74 767 - -
Spst9g01685 815 Pfam Ribonucleotide reductase, barrel domain 216 757 IPR000788 -
Spst9g01685 815 Gene3D - 74 768 - -
Spst9g01685 815 SUPERFAMILY PFL-like glycyl radical enzymes 215 770 - -
Spst9g01685 815 PRINTS Ribonucleotide reductase large chain signature 423 434 IPR000788 -
Spst9g01685 815 PRINTS Ribonucleotide reductase large chain signature 611 638 IPR000788 -
Spst9g01685 815 PRINTS Ribonucleotide reductase large chain signature 480 503 IPR000788 -
Spst9g01685 815 PRINTS Ribonucleotide reductase large chain signature 293 312 IPR000788 -
Spst9g01685 815 PRINTS Ribonucleotide reductase large chain signature 518 540 IPR000788 -
Spst9g01685 815 PRINTS Ribonucleotide reductase large chain signature 546 569 IPR000788 -
Spst9g01685 815 ProSiteProfiles ATP-cone domain profile. 1 92 IPR005144 -
Spst9g01685 815 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN 1 814 IPR039718 -
Spst9g01685 815 ProSitePatterns Ribonucleotide reductase large subunit signature. 600 622 IPR013346 -
Spst9g01685 815 Pfam Ribonucleotide reductase, all-alpha domain 142 212 IPR013509 GO:0004748|GO:0005524|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01685 Spst-Chr9 17201264 17205654 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01685 K10807 - gmx:100791639 1533.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01685 9 17201264 17205654 Spst9g01685 9 17201264 17205654 ECH
Spst8g01432 8 13524647 13530167 Spst9g01685 9 17201264 17205654 PCT