Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01432 ATGGGAGTGGTGACTGTTTCTAGCTCAGCTGCAAGGACTCCATTGGGATTGAATACAAAGTTTTCCACTAATCGTCTGAAGAGACCTTTAATTGTGGCATTTAAAGGGGATAAACACAATGACTCAGCTTTGGTTACAACTCAAGAGAAAATCCCTGTGCCCGTTGAGGCTACCAAGGCGCAGAAGAAAAAGATAGGGAAAGCTAGCAAACTGCCTAAGAGAGAAAGAGTTGCCTTTGCTGAGGAAAATTCTCCATCTTCCTCGGATGTGGACTACACTGAAGCTGCTGCTATGCTTGAAAATATATACAAACTCAGCCCTGCTTCTGATACTGGTAATGCAGAATGTGTAGATGGTAAAATCAAAAGGGTCTCCCGGAGAGGGAAGAAGACTGTTGATGATGGTGAAGAAAAGGAGTTAAACGGTGATAAGGTGGTCAGCAACCAGAACAAGAAAGCTAAACGGTTGAATCTTGATCAGAGGATTTCATTGAAGAGGAACAAAGATGGGGACGAAATCGTTCCCACACGAAAGAAAAGAAATGCTAGGAAAAGAATTGAGAAGATTGAAGAACTTATTAGGGAATATTCAGTGTCAACTGATTTTGTCAGTATGGACTGGAGAAGAATGAGAATACCTCCTGTTCTTTCTTCTTCAGAGCATGCTTGGTTGTTCAAATTGATGCAACCTATGAAGACACTGCTTCAAGTGAAAGAAAATTTACAGAAGGAGCTAGCAAGAGAACCTGCGGATTTTGAACTAGCCGATGCAACAAACATGAGCATTGCTCATGTAAAGAAAGCATTGGAGGTTGGTCAAGCTGCAAGAAACAAACTCATAAAGCACAATCTCCGGCTTGTCTTGTTCGTGATCAACAAATATTTTACAGATTTTGCAAGTGGCTCTAGGTTTCAAGATCTTTGTCAGGCAGGAGTTAAGGGACTTATGACAGCAATCGATCGTTTTGAGCCAAACAGAAGATTTCGGCTATCAACATACAGTCTATTTTGGATAAGACATGCTATCATTCGTTCGATGACCCTCTCAAGCTTCGTACGTGTTCCCTTTGGGCTTGAATCGGTTCGAGCAGAAATCCAAAAAGCTAAAACCGAGTTAACGTTTGAGCTTCAGAGGTCACCAACAGAGGAAGAAATAATAGAAAGAGTTAAAATATCCCCTGAAAGATACCATGACGTAATGAAGGCATCAAAATCCATTCTTTCATTGAACTCGAGGCATATAACTACAGAAGAGGAGTTCATTAATGGGGTGGTTGATGATGAAGGTGTTAATGGTGATAATAGGAAGCAACCTGCTCTGCTAAGGCTTGCTCTTGATGATGTGCTTGATTCTCTGAAGCCGAAGGAGAGTTTGGTGATCAGACAGAGATTTGGACTGGATGGAAAGGGTGACAGAACCTTGGGAGAAATTGCTGGGAACTTGAACATATCAAGGGAAATGGTAAGAAAATACGAAGTGAAGGCTCTTATGAAGCTCAAGCATTCAGCTCGATTGGATTATCTTCGTCGTTATGTTGTATAA 1542 0.4137 MGVVTVSSSAARTPLGLNTKFSTNRLKRPLIVAFKGDKHNDSALVTTQEKIPVPVEATKAQKKKIGKASKLPKRERVAFAEENSPSSSDVDYTEAAAMLENIYKLSPASDTGNAECVDGKIKRVSRRGKKTVDDGEEKELNGDKVVSNQNKKAKRLNLDQRISLKRNKDGDEIVPTRKKRNARKRIEKIEELIREYSVSTDFVSMDWRRMRIPPVLSSSEHAWLFKLMQPMKTLLQVKENLQKELAREPADFELADATNMSIAHVKKALEVGQAARNKLIKHNLRLVLFVINKYFTDFASGSRFQDLCQAGVKGLMTAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSSFVRVPFGLESVRAEIQKAKTELTFELQRSPTEEEIIERVKISPERYHDVMKASKSILSLNSRHITTEEEFINGVVDDEGVNGDNRKQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKYEVKALMKLKHSARLDYLRRYVV 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01432 513 Pfam Sigma-70 region 2 279 345 IPR007627 GO:0003700|GO:0006352|GO:0006355
Spst9g01432 513 Gene3D RNA Polymerase Primary Sigma Factor 42 350 - -
Spst9g01432 513 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 354 425 IPR013324 -
Spst9g01432 513 Pfam Sigma-70, region 4 448 501 IPR007630 GO:0003700|GO:0006352|GO:0006355
Spst9g01432 513 Pfam Sigma-70 region 3 364 431 IPR007624 GO:0003700|GO:0006352|GO:0006355
Spst9g01432 513 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 197 346 IPR013325 GO:0003700|GO:0006352|GO:0006355
Spst9g01432 513 Gene3D - 436 513 IPR036388 -
Spst9g01432 513 Coils Coil 358 378 - -
Spst9g01432 513 Coils Coil 179 199 - -
Spst9g01432 513 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 417 506 IPR013324 -
Spst9g01432 513 NCBIfam sigma-70 family RNA polymerase sigma factor 275 501 IPR014284 GO:0003700|GO:0006352|GO:0006355
Spst9g01432 513 CDD Sigma70_r4 442 500 - -
Spst9g01432 513 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 80 512 - -
Spst9g01432 513 Gene3D - 351 404 IPR036388 -
Spst9g01432 513 PRINTS Major sigma-70 factor signature 306 319 IPR000943 GO:0003700|GO:0006352|GO:0006355
Spst9g01432 513 PRINTS Major sigma-70 factor signature 452 464 IPR000943 GO:0003700|GO:0006352|GO:0006355
Spst9g01432 513 PRINTS Major sigma-70 factor signature 330 338 IPR000943 GO:0003700|GO:0006352|GO:0006355
Spst9g01432 513 PRINTS Major sigma-70 factor signature 488 499 IPR000943 GO:0003700|GO:0006352|GO:0006355
Spst9g01432 513 PRINTS Major sigma-70 factor signature 473 488 IPR000943 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01432 Spst-Chr9 14313964 14316222 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01432 K03093 - gmx:100776369 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01432 9 14313964 14316222 Spst8g01817 8 22007607 22018311 PCT