Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01374 ATGGCTAACAACGCTGCTGCCTGTGCTGAGAGAGCAACTAATGACTTGCTCAGCGGCCCGGACTGGGCTATCAATATAGAGTTGTGTGATATCATTAATATGGACCCGGGGCAAGCAAAGGATGCATTGAAGATAATCAAGAAGCGATTGGGCAGTAAAAATCCAAAGATACAGCTTCTGGCACTTTTTGTACTGGAGACCCTCAGTAAAAATTGTGGTGAAAGTGTATTTCAGCAGATAATTGAACGGGATATCTTACATGAAATGGTTAAGATTGTGAAGAAAAAGCCGGATTTAAATGTGAGGGAAAAGATATTGATTTTAATTGATACATGGCAAGAAGCTTTTGGGGGGCCAACTGGAGTTTATCCTCAATATTATGCAGCATATAATGAATTGAAGTCTGCTGGAGTTGAATTTCCACCAAGAGATGAGAATAGCGTACCATTCTTTACTCCTCCTCAAACTCAGCCAATTGCTCATTCTGCTGAAGAATATGATGATGCTACTATTCAGGCTTCTCTCCAGTCAGATGCATCTGGCCTTAGTTTGACAGAAATTCAAAATGCTGAAGGACTAGCTGATGTGTTAATGGAAATGCTTAGTGCCTTGAATCCTAAAGACCATGAGGGTGTGAAGGAGGAAGTGATTGTTGACCTTGTTGACCAGTGCCGTTCATACCTAAAGCGGGTCATGCTTCTTGTGAACAGTACTACGGATGAGCAGCTTCTAATCCAGGGATTGGCACTGAATGACAGCCTTCAGCGAGTGCTCCGTCGGCATGATGATATTGTGAAAGGAACTGCTGATTCAGGTGCTAAAGAAGTAGAAACTTCAGTTCTGCCACTTGTAAATGTAAACCATGAGGATGATGAACCAGAGGAAGATTTTACTCAACTAGCCCATAGGTCATCACGTGATACTCTAGTACAGAATCGGAAACCAGTCTATGACAAGGTAGAACCAGGGAGGATAAACCCACTTATTCCCCCACCGCCAGTATCAAAGAGGCCAGTCTACTCTGGCACCGGTATGGTTGACTATCTCAGCGGTGATACTTACAAGGCAGAAGGATCTCCTGAAAACTCGAACCCCACTTCAGTTGCAGCTCCTGTCCATTCTAGCCCTAATCCAAACTCATCATTTTCTTCATCTCGGCCGCATGCCGTGAGTACTTCATCACCAATTTTTAGCAGCCAGCCGGTGTACGACGAACAGCCATCTTCTGTGGACAGATCTTCAGAGAGTCTGCCACCAGCTCCCTGGGACACTCAATCTCCTGGCATCATTCCACCCCCACCTTCAAAGTATAATCAGAGACAACAGTTTTTTGAGCAGCAAGGTGCATCCCATTCAAGTAGTGGATCCAGTTCCTCTTATGACAGCTTGGCGGGACAAACTCAAAATCTCTCCCTGAATTCATCCTCCCCAACCAAACAACAGAAGCCAGAAGATGCCCTTTTCAAAGATCTTGTTGATTTTGCAAAATCCAAAACCTCGTCATCTTCCAAACCTAATAGGTCATATTGA 1530 0.4425 MANNAAACAERATNDLLSGPDWAINIELCDIINMDPGQAKDALKIIKKRLGSKNPKIQLLALFVLETLSKNCGESVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPTGVYPQYYAAYNELKSAGVEFPPRDENSVPFFTPPQTQPIAHSAEEYDDATIQASLQSDASGLSLTEIQNAEGLADVLMEMLSALNPKDHEGVKEEVIVDLVDQCRSYLKRVMLLVNSTTDEQLLIQGLALNDSLQRVLRRHDDIVKGTADSGAKEVETSVLPLVNVNHEDDEPEEDFTQLAHRSSRDTLVQNRKPVYDKVEPGRINPLIPPPPVSKRPVYSGTGMVDYLSGDTYKAEGSPENSNPTSVAAPVHSSPNPNSSFSSSRPHAVSTSSPIFSSQPVYDEQPSSVDRSSESLPPAPWDTQSPGIIPPPPSKYNQRQQFFEQQGASHSSSGSSSSYDSLAGQTQNLSLNSSSPTKQQKPEDALFKDLVDFAKSKTSSSSKPNRSY 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01374 509 Gene3D - 2 158 IPR008942 -
Spst9g01374 509 Pfam VHS domain 9 134 IPR002014 GO:0035091|GO:0043130
Spst9g01374 509 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
Spst9g01374 509 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
Spst9g01374 509 SUPERFAMILY ENTH/VHS domain 8 142 IPR008942 -
Spst9g01374 509 MobiDBLite consensus disorder prediction 320 509 - -
Spst9g01374 509 MobiDBLite consensus disorder prediction 495 509 - -
Spst9g01374 509 PANTHER TOM1-LIKE PROTEIN 1 505 IPR044836 GO:0035091|GO:0043130|GO:0043328
Spst9g01374 509 MobiDBLite consensus disorder prediction 356 421 - -
Spst9g01374 509 CDD VHS 10 135 - -
Spst9g01374 509 MobiDBLite consensus disorder prediction 435 482 - -
Spst9g01374 509 SUPERFAMILY GAT-like domain 140 267 - -
Spst9g01374 509 FunFam TOM1-like protein 2 4 151 - -
Spst9g01374 509 CDD GAT_GGA-like_plant 186 264 - -
Spst9g01374 509 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Spst9g01374 509 Pfam GAT domain 194 267 IPR004152 GO:0035091|GO:0043130
Spst9g01374 509 Gene3D - 175 273 IPR038425 -
Spst9g01374 509 PIRSF TOM1 1 508 IPR014645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01374 Spst-Chr9 13518699 13528861 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01374 - - gmx:100792343 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01428 8 13427154 13433355 Spst9g01374 9 13518699 13528861 PCT