Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01356 ATGTTGTTTTGGAATATGTGTCTCCTAACCCAATCTGACTTGAAGCGTATTTTTGAGCAAGTGGACGTGAATGGGGACGGGTTCCTGAGCCTTGAGGAGCTCAATCGCCTGCTTCAAATGACAGGTAATTCCCACTACACCATACAAGAGTTGGAATCGCTGGTGGAACAGAAGACCCTTGGTTTCACCGAGTTCTTGTTCTTTTACAAATCCATTTCGGAGCAGAAAAATGGAGAAAGCATAGGAGGTGGTGGTGGTGGTGGTGGTGACGCAGAGGAACTGGAGAACGACCTCGTGAAAACGTTCAAGGTGTTTGACTTGGATGGAGATGGGTTCATCACCAGCCAAGAGCTGGAGTCTGTGCTCAAGAGGCTTGGCATGTGGGACGAAACCAATGGCAAGGATTGCAGATCCATGATTCGATTCTATGACACCAACTTGGATGGTCGTCTTGATTTCCAGGAATTCAAGAACATGATGTTGCTTTCCAAAGCTTGA 498 0.4699 MLFWNMCLLTQSDLKRIFEQVDVNGDGFLSLEELNRLLQMTGNSHYTIQELESLVEQKTLGFTEFLFFYKSISEQKNGESIGGGGGGGGDAEELENDLVKTFKVFDLDGDGFITSQELESVLKRLGMWDETNGKDCRSMIRFYDTNLDGRLDFQEFKNMMLLSKA 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01356 165 FunFam Probable calcium-binding protein CML44 73 163 - -
Spst9g01356 165 Pfam EF-hand domain pair 97 160 IPR002048 GO:0005509
Spst9g01356 165 ProSiteProfiles EF-hand calcium-binding domain profile. 131 165 IPR002048 GO:0005509
Spst9g01356 165 CDD EFh 97 160 IPR002048 GO:0005509
Spst9g01356 165 ProSitePatterns EF-hand calcium-binding domain. 106 118 IPR018247 -
Spst9g01356 165 Gene3D - 10 75 - -
Spst9g01356 165 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Spst9g01356 165 ProSiteProfiles EF-hand calcium-binding domain profile. 93 128 IPR002048 GO:0005509
Spst9g01356 165 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 83 160 - -
Spst9g01356 165 SUPERFAMILY EF-hand 12 162 IPR011992 -
Spst9g01356 165 ProSitePatterns EF-hand calcium-binding domain. 22 34 IPR018247 -
Spst9g01356 165 Gene3D - 89 165 - -
Spst9g01356 165 Pfam EF hand 14 37 IPR002048 GO:0005509
Spst9g01356 165 SMART efh_1 13 41 IPR002048 GO:0005509
Spst9g01356 165 SMART efh_1 135 163 IPR002048 GO:0005509
Spst9g01356 165 SMART efh_1 97 125 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01356 Spst-Chr9 13277391 13277888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01356 9 161 EF-hand Containing Proteins AT1G21550 39.610 1.00e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01356 K13448 - gmx:100527117 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01356 9 13277391 13277888 Spst9g01356 9 13277391 13277888 ECH
Spst8g01408 8 13205464 13205937 Spst9g01356 9 13277391 13277888 PCT