Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01408 ATGTGTCCTCTATCACACAGTGATTTGCAGAAGATTTTTGAGAAGGTGGACATGGATGGAGATGGATTTTTGAGCCTTGAGGAGCTGAACATGCTGCTAGAGAAGACGGGCTTCAACTACAGCATCAAGGAGTTGGAGTCTCTTGTGGGAAAGAAGAGCCTTGACTTGAGTGAATTTTTGTTCTTTTATGAATCTATGTTGAAGCAGGGCAATGGGGAGGAAGAAGGAGGTGATGATGGTGATGAGATTGAGAAGGTGGAGAGGGACCTTGTGAAGGCTTTCAAGGTGTTTGATTTGGATGGTGATGGGTTCATCACAAGCCAAGAACTTGAGTGTGTGTTGAAGAAGCTTGGCATGTGGGATGAAGGGTGTGGGAAGGATAGCACAACCATGATATGCTCTTATGACACTAATTTTGATGGCAAACTTGATTTTCAAGAATTCAAGGACATGATGCTACTTACTACTTCCTGA 474 0.4346 MCPLSHSDLQKIFEKVDMDGDGFLSLEELNMLLEKTGFNYSIKELESLVGKKSLDLSEFLFFYESMLKQGNGEEEGGDDGDEIEKVERDLVKAFKVFDLDGDGFITSQELECVLKKLGMWDEGCGKDSTTMICSYDTNFDGKLDFQEFKDMMLLTTS 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01408 157 ProSitePatterns EF-hand calcium-binding domain. 98 110 IPR018247 -
Spst8g01408 157 FunFam Probable calcium-binding protein CML44 64 155 - -
Spst8g01408 157 SMART efh_1 89 117 IPR002048 GO:0005509
Spst8g01408 157 SMART efh_1 8 36 IPR002048 GO:0005509
Spst8g01408 157 SMART efh_1 127 155 IPR002048 GO:0005509
Spst8g01408 157 SUPERFAMILY EF-hand 6 154 IPR011992 -
Spst8g01408 157 Pfam EF hand 9 32 IPR002048 GO:0005509
Spst8g01408 157 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Spst8g01408 157 Pfam EF-hand domain pair 89 152 IPR002048 GO:0005509
Spst8g01408 157 CDD EFh 89 152 IPR002048 GO:0005509
Spst8g01408 157 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Spst8g01408 157 ProSiteProfiles EF-hand calcium-binding domain profile. 85 120 IPR002048 GO:0005509
Spst8g01408 157 Gene3D - 122 157 - -
Spst8g01408 157 Gene3D - 80 121 - -
Spst8g01408 157 Gene3D - 5 69 - -
Spst8g01408 157 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 53 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01408 Spst-Chr8 13205464 13205937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01408 4 153 EF-hand Containing Proteins AT1G21550 40.260 1.64e-30 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01408 K13448 - gmx:100779760 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01408 8 13205464 13205937 Spst8g01408 8 13205464 13205937 ECH
Spst8g01408 8 13205464 13205937 Spst9g01356 9 13277391 13277888 PCT