Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01307 ATGGATGTGAAAAGTAGGGGATTTTCATTCACCACGGTTTTACTCTTTTTGCTTCTTTCTTCCATTTTCTCAACCTCCTTCTCAGACACCGATCAGATTCTCAACTCCAAAAAGCCAACACCCTCAACCTCTGTTCCCTCCCTTGCTTCCTCTGTCGCTTTTCAGATTAAAGGAAATGTTTATCCAATTGGGTATTATACGGTGAACATTGCTATTGGCAATCCCCCTAAGGTTTATGATCTTGACATTGACACCGGAAGTGATCTCACTTGGGTTCAGTGTGATGCACCATGTAAAGGTTGCACCATACCTCAGAATCGACTTTATAAACCCCGGGGCAACCTTGTGAAATGTGTGGATCCCTTGTGTACTGGAGTCCAGTCAGCACCTCCTTGTGCTGTAGCAAATGAGCAATGTGACTATGAGGTTGACTATGCAGATCAAGGATCGTCTCTGGGTGTGTTAGTCCGAGATTATATTCCAGTTAAATTCACCAATGGATCTTTGGCACGCCCTATTCTGGGCTTCGGATGTGGATATGATCAAACGCATCAGGGTCATAATCCCCCACCATCCACAGCAGGGGTTCTTGGCCTTGGAAATGGCAGAACAAGCATTGTATCTCAGCTTCACTCTCTTGGCCTAATTCGCAATGTGGTAGGCCACTGCTTAAGTGGGAGAGGAGGAGGCTTTCTATTCTTTGGAGATCAGTTTGTTCCCAAATCTGGAGTTGTTTGGACACCCATATTGCAAAGTTCCTCAGGACAACACTATAAAACAGGTCCAGCAGACCTGTTTTTCGGTGGAAAACCTACATCTCTGAGAGGTCTTGAATTTATCTTTGATAGTGGGAGCTCCTACACATATTTCAATTCCCAATCTCATAGAGCTCTTGTTGATCTGATAACTAATAATATAAAGGGGAAGTCGTTGACTAGAGCAACTGAGGATCCATCTCTCCCAATTTGTTGGAAGGGTCCAAAGCCTTTCAAAACTTTACATGATGTCACTGGAAATTTTAAGCCACTGATACTCAGCTTCACAAAATCAAAGAATTCGCAGCTGCAAGTACCACCAGAAGCTTATCTAATTGTCACTAAACAAGGCAATGTCTGCTTGGGGATTCTTGATGGCACTGAAATAGGAATCGGAAATATCAACATAATTGGAGATATATCTTTACAAGATAAGATAGTGATTTATGACAACGAGAAACAGCAGATTGGATGGGCTTCTGCAAATTGTGATAGACCTTCCAAGTCATAA 1266 0.4273 MDVKSRGFSFTTVLLFLLLSSIFSTSFSDTDQILNSKKPTPSTSVPSLASSVAFQIKGNVYPIGYYTVNIAIGNPPKVYDLDIDTGSDLTWVQCDAPCKGCTIPQNRLYKPRGNLVKCVDPLCTGVQSAPPCAVANEQCDYEVDYADQGSSLGVLVRDYIPVKFTNGSLARPILGFGCGYDQTHQGHNPPPSTAGVLGLGNGRTSIVSQLHSLGLIRNVVGHCLSGRGGGFLFFGDQFVPKSGVVWTPILQSSSGQHYKTGPADLFFGGKPTSLRGLEFIFDSGSSYTYFNSQSHRALVDLITNNIKGKSLTRATEDPSLPICWKGPKPFKTLHDVTGNFKPLILSFTKSKNSQLQVPPEAYLIVTKQGNVCLGILDGTEIGIGNINIIGDISLQDKIVIYDNEKQQIGWASANCDRPSKS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01307 421 PRINTS Pepsin (A1) aspartic protease family signature 72 92 IPR001461 GO:0004190|GO:0006508
Spst9g01307 421 PRINTS Pepsin (A1) aspartic protease family signature 387 402 IPR001461 GO:0004190|GO:0006508
Spst9g01307 421 PRINTS Pepsin (A1) aspartic protease family signature 279 290 IPR001461 GO:0004190|GO:0006508
Spst9g01307 421 Gene3D Acid Proteases 237 418 IPR021109 -
Spst9g01307 421 Gene3D Acid Proteases 42 236 IPR021109 -
Spst9g01307 421 Pfam Xylanase inhibitor N-terminal 66 236 IPR032861 -
Spst9g01307 421 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 279 290 IPR001969 GO:0004190|GO:0006508
Spst9g01307 421 FunFam Aspartyl protease family protein 42 236 - -
Spst9g01307 421 SUPERFAMILY Acid proteases 59 417 IPR021109 -
Spst9g01307 421 ProSiteProfiles Peptidase family A1 domain profile. 66 411 IPR033121 -
Spst9g01307 421 PANTHER ASPARTYL PROTEASES 52 409 IPR001461 GO:0004190|GO:0006508
Spst9g01307 421 FunFam Aspartic proteinase Asp1 isoform A 240 419 - -
Spst9g01307 421 Pfam Xylanase inhibitor C-terminal 279 411 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01307 Spst-Chr9 12592894 12595360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01307 36 421 Miscellaneous Gene Families AT1G44130 57.069 2.00e-166 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01307 - - gmx:100803640 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01368 8 12805210 12808185 Spst9g01307 9 12592894 12595360 PCT