Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01368 ATGGATGTTCGAACCAAGGGAATAGCATTGCTCACGCTTCTTCTATTTTCTGCCATTTCCTCGTTCTCTATCTCAGCAGCCAATCAACCCCACAAAGTCAAGAACCTCGCCACCCCACATCGCCTTTCATCCGCTGCTGTTTTCAAAGTTCAGGGGAATGTGTATCCTCTTGGGCATTACACAGTGTCTCTCAACATTGGGTATCCCCCTAAGCTTTACGACCTTGACATAGACTCAGGTAGTGACATCACTTGGGTTCAGTGTGATGCACCATGTAAAGGTTGCACCAAGCCTCGTGATCAACTTTATAAACCCAATCACAACCTTGTGAAATGTGTCGACCAATTGTGTTCTGAAGTGAACTTATCAACAGACCATAATTGTGCTTCTCCAGATGACCAATGTGACTATGAAGTTGAGTATGCAGATAATGGATCATCTCTGGGTGTGCTAGTGCGGGACTACATTCCTTTTCAATTCACCAATGGCTCTGTGGCGCGCCCTAAGATAGCCTTTGGGTGCGGATATGATCAAAAGTATTCTGGTTCTACCGCCCCACCTTCTACTGCAGGAGTCCTTGGCCTTGGCAACGGCAGAGCAAGCATTTTAATACAGCTTCATTCTTTGGGTCTGATCCGCAATGTAGTTGGGCACTGCTTAAGTACAGGAGGAGGAGGGTTTTTATTCTTTGGAGATGATCCCATTCCCTCTTCAGGAATTTTTTGGACATCCATGCTGCCTAGTTCTTCGGAAAAACACTACAGCTCAGGACCAGCAGAGCTGTTGTTCAATGGAAACCCTACTAATGTCAAGGGTCTTGAACTTATCTTCGATAGTGGGAGCTCTTACACATACTTCAACTCCATAGCGTATCAAGATATTGTAAATTTGGTGACTAATGATTTAAAGGGGAAACAGTTGACAAGAGAAGCCGGGGATCCATCACTTCCAATTTGTTGGAAGGGTCCAAAGTCTTTCAAATCGATAAGTGATGTCAAGAAATACTTCAAACCCCTTGCATTGAGCTTCACAAAAACTAAGAATGTGCAGATGGATCTTCCACCTGAAGCTTATCTTATTATCACTAAACATGGGAATGTATGCTTGGGGATTCTAGATGGCACTGAAGTAGGACTAGAAAATCTCAACATAATAGGAGACATCTCTTTACAAGATAAAATGGTGATTTATGACAATGAGAAGCAGCAGATTGGATGGGTTTCTTCAAATTGTGATAGGCTTCCCAATGTGGAGCGTGACTCAGAAGGTGATTTTCCACACCCAAATGCAGCCAATTTCGGTATCTTTGGGAACGGTTGCCCTGCATCTTCTGAAGATATAGACGATCAATGA 1353 0.4361 MDVRTKGIALLTLLLFSAISSFSISAANQPHKVKNLATPHRLSSAAVFKVQGNVYPLGHYTVSLNIGYPPKLYDLDIDSGSDITWVQCDAPCKGCTKPRDQLYKPNHNLVKCVDQLCSEVNLSTDHNCASPDDQCDYEVEYADNGSSLGVLVRDYIPFQFTNGSVARPKIAFGCGYDQKYSGSTAPPSTAGVLGLGNGRASILIQLHSLGLIRNVVGHCLSTGGGGFLFFGDDPIPSSGIFWTSMLPSSSEKHYSSGPAELLFNGNPTNVKGLELIFDSGSSYTYFNSIAYQDIVNLVTNDLKGKQLTREAGDPSLPICWKGPKSFKSISDVKKYFKPLALSFTKTKNVQMDLPPEAYLIITKHGNVCLGILDGTEVGLENLNIIGDISLQDKMVIYDNEKQQIGWVSSNCDRLPNVERDSEGDFPHPNAANFGIFGNGCPASSEDIDDQ 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01368 450 Gene3D Acid Proteases 245 418 IPR021109 -
Spst8g01368 450 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 275 286 IPR001969 GO:0004190|GO:0006508
Spst8g01368 450 PRINTS Pepsin (A1) aspartic protease family signature 66 86 IPR001461 GO:0004190|GO:0006508
Spst8g01368 450 PRINTS Pepsin (A1) aspartic protease family signature 275 286 IPR001461 GO:0004190|GO:0006508
Spst8g01368 450 PRINTS Pepsin (A1) aspartic protease family signature 383 398 IPR001461 GO:0004190|GO:0006508
Spst8g01368 450 Pfam Xylanase inhibitor C-terminal 274 406 IPR032799 -
Spst8g01368 450 ProSiteProfiles Peptidase family A1 domain profile. 60 407 IPR033121 -
Spst8g01368 450 FunFam Aspartic proteinase Asp1 isoform A 236 415 - -
Spst8g01368 450 Pfam Xylanase inhibitor N-terminal 60 232 IPR032861 -
Spst8g01368 450 Gene3D Acid Proteases 35 232 IPR021109 -
Spst8g01368 450 PANTHER ASPARTYL PROTEASES 41 405 IPR001461 GO:0004190|GO:0006508
Spst8g01368 450 FunFam Aspartyl protease family protein 37 232 - -
Spst8g01368 450 SUPERFAMILY Acid proteases 52 416 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01368 Spst-Chr8 12805210 12808185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01368 20 418 Miscellaneous Gene Families AT1G77480 58.000 6.64e-168 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01368 - - gmx:100790299 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01368 8 12805210 12808185 Spst8g01368 8 12805210 12808185 ECH
Spst8g01368 8 12805210 12808185 Spst9g01307 9 12592894 12595360 PCT