LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst9g01199	ATGGCCCTCCCCTTCACCTTTGCGACCGTCCTTTTCCTAACGCTGCATACTGTGAGTGTGCACTCATCTCAGCCACCATTCGCTTGCGATTGGTCCAACCCTTCCTCCAGATCCTACCCATTCTGCAACCCCAAACTCCCCATCCCCCAACGAACCAAAGACCTTCTCTCCAGACTCACACTCGATGAGAAACTCTCCCAACTCGTCAACACTGCCCCTTCCATACCCCGCCTAGGCATCCCCGCCTACCAGTGGTGGAGCGAGGCCCTGCACGGTGTTGGAAGCGTGGGCCGCGGCATCCGCTTCAATGGCTCCATCTCCTCCGCCACTAGCTTCCCTCAGGTCATCCTCAGCGCAGCCACCTTCGACTCCCTCCTCTGGTACAGAATCGGTCGCGCCATTGGGATCGAAGCCCGCGCAATCTATAATGCGGCCCAGGCCCAGGGCCTCACCTTCTGGGCTCCCAATATTAACATCTTCAGAGACCCGCGATGGGGCCGGGGACAAGAGACCCCTGGCGAAGACCCTCTCCTCACTTCTGGATATGCAGTTTCCTACGTCAGGGGCCTCCAGGGAGATTCCTTCCACGGTACCAAGTTCCGGGGCCACCTTCAAGCCTCCGCCTGTTGCAAACACTTCACCGCTTACGATTTGGACAAATGGAAGGGCGTCGATCGCTTTCTCTTCGATGCTCGCGTGACTTTGCAAGATTTGGCCGATACATACCAGCCTCCATTTCAGAGTTGCGTACAGCAAGGAGGGGCCAGTGGGATAATGTGTGCTTACAACCGCGTCAACGGGGTTCCAAGCTGTGCAGATTTCAACCTGCTAACCACAACGGCCAGAAAACAATGGGATTTTCATGGCTATATTACGTCCGATTGTGGAGCAGTGGGCATCATACACGACCAGCAAGGATTTGCAAAATCAGCGGAGGATGCAGTGGCCGATGTTCTTCGTGCTGGGATGGATGTCGAATGTGGTACTTATTTGACGGATCATGCTAAATCCGCAGTGTTGCAGAAAAAAGTGTCCATGTCTCAGATAGACCGTGCCCTTCACAACCTGTTTTCTATTAGAATGAGGCTAGGCCTGTTTGATGGAAATCCAAGCAGGCTCTCATTTGGCATGATTGGTCCCAATCATGTCTGTTCCAAAGAGCACCAATATCTGGCTCTTGAAGCTGCAAGAAACGGCATCGTCCTCTTAAAAAACTCTCCCACACTTCTCCCACTTCCAAAAACGAGCCCCAGCATTTCCTTAGCAGTGATAGGTCCCAATGCCAATGCTTCTCCTTTAACTCTTCTAGGAAACTATGCTGGCCCTCCTTGTAAATTTGTGACAATATTGCAAGGGTTTCAGCACTATGTGAAGAACGCTGTTTATCATCCTGGCTGTGATGGTGGACCGAAGTGCTCTTCGGCTCAAATAGAGCAGGCAGTAGAAGTTGCAAAAAAAGTGGATTATGTGGTGCTGGTTATGGGACTGGATCAAAGCGAAGAGAGGGAAGAACGTGATCGCATTCATCTAGACTTGCCGGGCAAGCAACTTGAGCTCATCATCAGCGTTGCTGAAGCTTCTAAGAAACCAGTTATTTTGGTGCTACTTTGTGGAGGGCCTGTAGATATCAGTTCAGCCAAGTATAACCACAAAGTTGGAGGCATCCTCTGGGCTGGTTATCCAGGAGAACTTGGAGGCATTGCACTTGCACAGATTATCTTTGGTGACCACAACCCAGGAGGAAGACTACCAATTACTTGGTACCCAAAAGATTACATCAAAGTACCGATGACAGACATGAGAATGAGAGCTGATCCTTCAACAGGCTATCCTGGGAGAACTTACCGATTTTACAAGGGTCCAAAAGTGTATGAATTTGGCTATGGACTAAGCTACTCAAAGTATTCCTATGAGTTTGTTTCTGTTACAAATGACAAGCTTCATTTGAATCACTCATCTACTCATTTGATGATTGAAAATTCAGAAAACATAAGGTACAAACTAGTTTCGGAGTTGAGTGATCATACCTGCCAAAGCATGTCACTCTCAGTCACAGTGAGAGTTCAAAATCATGGAAGCATGGTGGGGAAGCATCCTGTACTGCTTTTTATGAGGCCTAAAAACCAAAAAAGTGGAAGCCCTGTGAAACAGTTGGTGGCTTTTCAGAGTGTGATGCTTGATGCAGGGGAAATGACTCATGTTGGATTTGAGGTAAGTCCTTGTGAACATCTTAGTAGAGCAAATGAGGCTGGTGCAATGATAATAGAAGAAGGGTCTCATTTGTTGCTTGTAGATGATCAAGAGCACCCAATTGATATAATTGCTTGA	2328	0.4875	MALPFTFATVLFLTLHTVSVHSSQPPFACDWSNPSSRSYPFCNPKLPIPQRTKDLLSRLTLDEKLSQLVNTAPSIPRLGIPAYQWWSEALHGVGSVGRGIRFNGSISSATSFPQVILSAATFDSLLWYRIGRAIGIEARAIYNAAQAQGLTFWAPNINIFRDPRWGRGQETPGEDPLLTSGYAVSYVRGLQGDSFHGTKFRGHLQASACCKHFTAYDLDKWKGVDRFLFDARVTLQDLADTYQPPFQSCVQQGGASGIMCAYNRVNGVPSCADFNLLTTTARKQWDFHGYITSDCGAVGIIHDQQGFAKSAEDAVADVLRAGMDVECGTYLTDHAKSAVLQKKVSMSQIDRALHNLFSIRMRLGLFDGNPSRLSFGMIGPNHVCSKEHQYLALEAARNGIVLLKNSPTLLPLPKTSPSISLAVIGPNANASPLTLLGNYAGPPCKFVTILQGFQHYVKNAVYHPGCDGGPKCSSAQIEQAVEVAKKVDYVVLVMGLDQSEEREERDRIHLDLPGKQLELIISVAEASKKPVILVLLCGGPVDISSAKYNHKVGGILWAGYPGELGGIALAQIIFGDHNPGGRLPITWYPKDYIKVPMTDMRMRADPSTGYPGRTYRFYKGPKVYEFGYGLSYSKYSYEFVSVTNDKLHLNHSSTHLMIENSENIRYKLVSELSDHTCQSMSLSVTVRVQNHGSMVGKHPVLLFMRPKNQKSGSPVKQLVAFQSVMLDAGEMTHVGFEVSPCEHLSRANEAGAMIIEEGSHLLLVDDQEHPIDIIA	775

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst9g01199	775	SMART	Fn3_like_2	698	768	IPR026891	-
	Spst9g01199	775	Pfam	Glycosyl hydrolase family 3 N terminal domain	105	356	IPR001764	GO:0004553\|GO:0005975
	Spst9g01199	775	PANTHER	SUGAR HYDROLASE-RELATED	18	771	IPR044993	GO:0009044\|GO:0045493
	Spst9g01199	775	Pfam	Glycosyl hydrolase family 3 C-terminal domain	400	632	IPR002772	GO:0004553\|GO:0005975
	Spst9g01199	775	FunFam	probable beta-D-xylosidase 2	385	633	-	-
	Spst9g01199	775	FunFam	probable beta-D-xylosidase 7	666	774	-	-
	Spst9g01199	775	Gene3D	Immunoglobulins	661	774	IPR013783	-
	Spst9g01199	775	FunFam	probable beta-D-xylosidase 7	51	372	-	-
	Spst9g01199	775	PRINTS	Glycosyl hydrolase family 3 signature	280	298	IPR001764	GO:0004553\|GO:0005975
	Spst9g01199	775	PRINTS	Glycosyl hydrolase family 3 signature	206	222	IPR001764	GO:0004553\|GO:0005975
	Spst9g01199	775	PRINTS	Glycosyl hydrolase family 3 signature	112	131	IPR001764	GO:0004553\|GO:0005975
	Spst9g01199	775	SUPERFAMILY	Beta-D-glucan exohydrolase, C-terminal domain	400	635	IPR036881	GO:0004553\|GO:0005975
	Spst9g01199	775	Gene3D	-	385	633	IPR036881	GO:0004553\|GO:0005975
	Spst9g01199	775	Gene3D	-	51	373	IPR036962	GO:0004553\|GO:0005975
	Spst9g01199	775	SUPERFAMILY	(Trans)glycosidases	39	398	IPR017853	-
	Spst9g01199	775	Pfam	Fibronectin type III-like domain	700	766	IPR026891	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst9g01199	Spst-Chr9	11141552	11146383	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst9g01199	20	771	Glycoside Hydrolase	AT1G78060	65.166	0.0	1026

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst9g01199	-		-	aprc:113867121	1379.77

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst9g01199	9	11141552	11146383	Spst9g01199	9	11141552	11146383	ECH
	Spst8g01254	8	11588934	11594106	Spst9g01199	9	11141552	11146383	PCT