Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01254 ATGAGTTCTGACAACTCAGTCTCAATCACCACGTTATCGTTTTGTTCCGGTCCAACCTACTCAGAGACGCGCCTCTTTTTAACCTTTCACACTCTGCTTTACGAATCTACACTTCCCACCATGGCTCTCCCTCCCTCTTCTTCCATTCCCATCACATTCTTCTCTATCACCTGTTTCCTTCTCCTCACTCTGCTCCACGCCGAGTCAACTGACCCTCCTTACTCCTGTGACTCCTCCTCCAACTCACCCTACTATGCATTCTGCAACACAAAGCTCCCCATCCCCCAGAGAGCAAAAGACTTGGTCTCGCGACTCACCCTCGACGAGAAACTCGCCCAACTCGTCAACTCAGCACCGGCGATTCCCCGACTCGGCATCCCCAAATATCAGTGGTGGAGCGAAGCCTTACACGGCGTCGCCGACGCAGGACTCGGCATCAGATTCAACGGCACCATCAAATCCGCCACCAGCTTCCCCCAAGTGGTTCTCACTGCGGCTTCCTTCGACCAAAGCCTCTGGTACCAAATTAGCAAGGCGATTGGGAGGGAAGCGAGGGCGGTGTACAATGCGGGGCAAGCGTTAGGGATGACGTTTTGGGCTCCGAACATTAACATTTTCAGAGATCCACGGTGGGGAAGGGGGCAAGAGACGGCGGGGGAAGACCCATTAATGAATGCAAAGTATGGTGTGGCTTACGTGAGAGGGCTTCAAGGGGATTCCTTTGGAGGAGGGGAACTTGGGGAGAGGCTTCAAGCTTCTGCGTGTTGCAAGCACTTCACTGCCTATGATTTGGACCAATGGAAGGGCCTCAATCGCTTTGTCTACGATGCTCGTGTTTCATTGCAAGATTTGGCAGATACGTACCAACCTCCATTCCAGAGTTGCATTCAGCAAGGTCGAGCGAGTGGCATAATGTGTGCCTACAACCGTGTGAATGGGGTTCCAAACTGTGCAAATTATAATCTTTTAACCAAAACCGCAAGACAACAATGGAAATTTGATGGATATATTACGTCAGATTGTGGAGCAGTCTCTATCATACATGATAAACAAGGATATGCAAAAACAGCAGAGGATGCTATTGCCGATGTCTTTAGGGCAGGGATGGATGTGGAGTGTGGTGATTACATAACTAGGCATGCAAAATCAGCAGTGTCGCAGAAAAAATTGCCCATCTCTCAGATAGACCGTGCCCTTCAGAACCTATTCTCTATAAGAATGAGGCTAGGCCTATTTGATGGGAACCCCTCGAAGCTTCCCTATGGCACCATTGGTCCCAACCAAGTGTGTTCCAAAGAACACCTTCAACTGGCTCTTGAAGCAGCAAGAGATGGCATAGTCCTTCTAAAGAACACTGACTCACTTCTCCCACTTCCAAAAACAAGCCCAAGTGTGGCTCTCATTGGCCCAAATGCCAATGCCTCGTCACTAGTTTCCCTAGGAAACTACTATGGTCGTCCTTGCAAATTGGTGACCCTTTTGCAAGGCTTTGAGGGCTATGCTAAGGACACCACCTACCACCCTGGCTGTGATGATGGGACACGATGTGCCTCTGCACGGATACAAGAAGCTGTGGAGGTTGCAAAAAAGGTGGATTATGTTGTGCTTGTTATGGGGTTGGATCAAAGTCAAGAGAGGGAGTCACATGATAGAGAGTACCTAGGGTTGCCAGGGAAGCAAGAAGAGCTCATCAAGAGTGTGGCCAAGGCTTCTAAAAGGCCAGTTGTTTTGGTGCTCTTGTGTGGAGGCCCAGTGGATATCACTTCAGCCAAGTTTGATAACAAAGTTGGAGGAATCTTGTGGGCTGGGTACCCAGGGGAACTTGGAGGAGTGGCCCTGGCCCAGGTTATCTTTGGTGACCATAACCCAGGTGGTAAACTACCAATCACTTGGTATCCCAAGGATTTCATAAAAGTACCAATGACAGATATGAGGATGAGAGCTGATTCAGCCTCAGGCTACCCAGGGAGAACCTACAGATTTTACACTGGTCCAAAGGTCTATGAATTTGGTTACGGCCTAAGCTACACAAAATATTCCTACACACTCCTCTCTCTCTCACACAACACCCTCCACATCAACCAATCCTCCACCCATTTGATGACTGAAAATTCTGAAACCATCCGCTACAAACTGGTTTCAGACTTAGGCGAACAAACATGCCAAATCCTGTCATTGTCAATCACTTTGGGAGTCACAAATCATGGTAACATGACAGGGAAGCATCCTGTGTTGCTGTTTTTGAAGAAAGGACAAGTGAGAAACGGGAATCCAGTGAAACAATTGGTGGGGTTTCAAAGTGTGAAGTTAAATGCAGGGGAAACTGCTCAAGTGGGATTTGAGCTAAGCCCTTGTGAGCATCTTAGCATAGCGAACGAGGTTGGTTTAATGGTGATTGAAGAAGGGTCTTATTTGTTGCTTGTGGGGGACCAAGAGTACCCCTTCAAAGTCACAGTTTGA 2460 0.485 MSSDNSVSITTLSFCSGPTYSETRLFLTFHTLLYESTLPTMALPPSSSIPITFFSITCFLLLTLLHAESTDPPYSCDSSSNSPYYAFCNTKLPIPQRAKDLVSRLTLDEKLAQLVNSAPAIPRLGIPKYQWWSEALHGVADAGLGIRFNGTIKSATSFPQVVLTAASFDQSLWYQISKAIGREARAVYNAGQALGMTFWAPNINIFRDPRWGRGQETAGEDPLMNAKYGVAYVRGLQGDSFGGGELGERLQASACCKHFTAYDLDQWKGLNRFVYDARVSLQDLADTYQPPFQSCIQQGRASGIMCAYNRVNGVPNCANYNLLTKTARQQWKFDGYITSDCGAVSIIHDKQGYAKTAEDAIADVFRAGMDVECGDYITRHAKSAVSQKKLPISQIDRALQNLFSIRMRLGLFDGNPSKLPYGTIGPNQVCSKEHLQLALEAARDGIVLLKNTDSLLPLPKTSPSVALIGPNANASSLVSLGNYYGRPCKLVTLLQGFEGYAKDTTYHPGCDDGTRCASARIQEAVEVAKKVDYVVLVMGLDQSQERESHDREYLGLPGKQEELIKSVAKASKRPVVLVLLCGGPVDITSAKFDNKVGGILWAGYPGELGGVALAQVIFGDHNPGGKLPITWYPKDFIKVPMTDMRMRADSASGYPGRTYRFYTGPKVYEFGYGLSYTKYSYTLLSLSHNTLHINQSSTHLMTENSETIRYKLVSDLGEQTCQILSLSITLGVTNHGNMTGKHPVLLFLKKGQVRNGNPVKQLVGFQSVKLNAGETAQVGFELSPCEHLSIANEVGLMVIEEGSYLLLVGDQEYPFKVTV 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01254 819 Pfam Glycosyl hydrolase family 3 C-terminal domain 446 676 IPR002772 GO:0004553|GO:0005975
Spst8g01254 819 Gene3D Immunoglobulins 677 818 IPR013783 -
Spst8g01254 819 SMART Fn3_like_2 742 812 IPR026891 -
Spst8g01254 819 Pfam Fibronectin type III-like domain 744 811 IPR026891 -
Spst8g01254 819 PANTHER SUGAR HYDROLASE-RELATED 64 815 IPR044993 GO:0009044|GO:0045493
Spst8g01254 819 Gene3D - 431 676 IPR036881 GO:0004553|GO:0005975
Spst8g01254 819 FunFam probable beta-D-xylosidase 7 97 418 - -
Spst8g01254 819 Pfam Glycosyl hydrolase family 3 N terminal domain 151 403 IPR001764 GO:0004553|GO:0005975
Spst8g01254 819 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 446 679 IPR036881 GO:0004553|GO:0005975
Spst8g01254 819 FunFam probable beta-D-xylosidase 2 431 677 - -
Spst8g01254 819 SUPERFAMILY (Trans)glycosidases 85 445 IPR017853 -
Spst8g01254 819 PRINTS Glycosyl hydrolase family 3 signature 326 344 IPR001764 GO:0004553|GO:0005975
Spst8g01254 819 PRINTS Glycosyl hydrolase family 3 signature 158 177 IPR001764 GO:0004553|GO:0005975
Spst8g01254 819 PRINTS Glycosyl hydrolase family 3 signature 252 268 IPR001764 GO:0004553|GO:0005975
Spst8g01254 819 Gene3D - 97 419 IPR036962 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01254 Spst-Chr8 11588934 11594106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01254 68 819 Glycoside Hydrolase AT1G78060 63.540 0.0 1007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01254 - - gmx:100780688 1404.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01254 8 11588934 11594106 Spst8g01254 8 11588934 11594106 ECH
Spst8g01254 8 11588934 11594106 Spst9g01199 9 11141552 11146383 PCT