Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01188 ATGGAAGGGAAAACCAAGAACAAGGTGGACTTTGATCTGGGTTGCGGTTTGGTGGGGAGAATTTTCCACCTAAAAACCAATAACAGGCCAAGAAAATCCTCTGTTCATTCACTACCCGTGAAGCCTTGCAACACTGCACAACAGAGGGACCAGGCCAAAAACGAATCCAAACCCCCTTCAGACCATGAACCAAAGGTGCCACGAGATAGCGCCATTGGAACCACTCCTACACTGAAAGGGGAGCAGGATCCTGTGAGAAAGAGTAGCTCTAGTCACCGTGCACCTTCTGCATACCGAAACAATTTAAATGGGAGACTCTCAGACGCTGCTAGAACCTCAATTCAACAAAATCATGACCCAAATGATGAGAATAAGCAACAGAAAGAGAACTCTGGTAATTATCTGCAACTTGCTAGGATAAGTACAAGTGCTAGTCATCATCAGAACAACGAGACCAAATCCCCAGCCAAAGAATTTGTGTTACCAATCACTGGGAATTTGCTTGTGAATAGCAGCCCCAGAACTAGTGTTACCAAGAGCAAGGAGTTGAACTCCATGTTCTGTTCCTCTGCTTATAATAGTAACGCCAACAAAGGCGTGATGGGGAATATCATGAGGAAGAACAGCGATGAACTTGCTCAATTTCGGAGTCCAAGGATCAGCAGAGCGGACCCTGAGGTGATGAAGTCCATGGGGAATGAAGCCTACAAGCTAGGAAGATTTGAAGAGGCTTTGGTTTTGTATGACAGAGCCATTGCTCTTGACTCCAACACGGCAACGTACCATTGCAACAAGAGCGCAGCTTTGATAGGTTTGGGAAGGTTTCTGCAGGCAATTGTCGAGTGTGAGGAAGCTATCAGGTTGGAGCCTTCTTATGGCAGAGCCCACAACCGTTTGGCAACAATTTATTTCAGACTGGGAGAAGCACAAAAGGCACTGAATTGCAACGAAACAAGCCCATGTGTTGATTCTGTCCTCACTTTCCAAGCTCAGGCTCTTCAAAATCACCTTAGCAAATGCACTGAAGCTCGGGAAGTCAAAGACTGGAAAGCTATATTAAAGGAAACACAGGCTGCAGTATCATTAGGTGCCGATTCAGCTCCACAGGTGTATTGTTTACAAACTGAAGCCATGCTGAAGCTCCTAAGACATCAAGAGGCATATGCTACATACGAGAAAATGCCAAAATTTGACCTTGATAGTTGTAAAAAACTATTCGGCCTAGCTCGTAGTGCTTACCTGATGATGATAGCCGCGCAAATTTACTTGGCAGCCGGCAGGTTTGAGGATGCTGTAACAGCTTCTCAGCAAGCAGCTAAACTAGATCCAAGTAGCTTTGAGGTAAATGCAGTGGTGAGGAGAGCCAGAGCAGTGGCATCAGCCAGAGTGAGTGGTAACTTACTCTTCAAGGCATCAAAATTCTCGGAAGCATGCGCTGTCTACAATGAAGGACTAGAGCATGATCCATACAACGCAGTTCTGCTATGCAATAGGGCAGCATGTCGTTCTAAGCTAGGTCAGTTTGAAAAAGCAATTGAAGATTGCAACGTAGCATTTATCGTTCAGCCTAGTTATAGCAAGGCAAGGTTGAGGAGGGCAGATTGTAATGCCAAGTTGGAGCGATGGGAAGCTGCGATTCAAGACTACGAAATGCTATTAAGAGAAAAACCAGGGGATGAGGAGGTGGCTAGGGCTCTGTTTGAGACTCAGCTTCAACTCAAGTTGCTGCGTGGTGAAGATATTAAGGACTTGAAATTTGGATCAAATTTGTTTCTCATCTCTAGCAATGATCGGTTTAGGCACTATGTAACATCACCTGGGATGTCTGTGGTGCTCTTTTGCAACAAGGCAACCCACAAACAAGTGTTGTTGGTGTTGGAGCAAACCTGCAAGAGATTTCCATCAGTTAATTTTCTTAAGGTGGAGATTGAAGACCACCCCTACTTGGCAAAATCAGAAGGTGTGAACTGCGTCCCAGCCTTTAAAATATACAAGAATGGATCAAGGGTTAAAGAAATTCCAGGCAACAACCACGAGTTGTTAGAAAAATTAGTTAAATTATATAGTAGTTGA 2073 0.4467 MEGKTKNKVDFDLGCGLVGRIFHLKTNNRPRKSSVHSLPVKPCNTAQQRDQAKNESKPPSDHEPKVPRDSAIGTTPTLKGEQDPVRKSSSSHRAPSAYRNNLNGRLSDAARTSIQQNHDPNDENKQQKENSGNYLQLARISTSASHHQNNETKSPAKEFVLPITGNLLVNSSPRTSVTKSKELNSMFCSSAYNSNANKGVMGNIMRKNSDELAQFRSPRISRADPEVMKSMGNEAYKLGRFEEALVLYDRAIALDSNTATYHCNKSAALIGLGRFLQAIVECEEAIRLEPSYGRAHNRLATIYFRLGEAQKALNCNETSPCVDSVLTFQAQALQNHLSKCTEAREVKDWKAILKETQAAVSLGADSAPQVYCLQTEAMLKLLRHQEAYATYEKMPKFDLDSCKKLFGLARSAYLMMIAAQIYLAAGRFEDAVTASQQAAKLDPSSFEVNAVVRRARAVASARVSGNLLFKASKFSEACAVYNEGLEHDPYNAVLLCNRAACRSKLGQFEKAIEDCNVAFIVQPSYSKARLRRADCNAKLERWEAAIQDYEMLLREKPGDEEVARALFETQLQLKLLRGEDIKDLKFGSNLFLISSNDRFRHYVTSPGMSVVLFCNKATHKQVLLVLEQTCKRFPSVNFLKVEIEDHPYLAKSEGVNCVPAFKIYKNGSRVKEIPGNNHELLEKLVKLYSS 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01188 690 MobiDBLite consensus disorder prediction 28 105 - -
Spst9g01188 690 Coils Coil 532 552 - -
Spst9g01188 690 ProSiteProfiles TPR repeat profile. 412 445 IPR019734 GO:0005515
Spst9g01188 690 MobiDBLite consensus disorder prediction 75 105 - -
Spst9g01188 690 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 15 686 IPR044534 -
Spst9g01188 690 Pfam TPR repeat 232 267 - -
Spst9g01188 690 Gene3D Glutaredoxin 585 689 - -
Spst9g01188 690 SUPERFAMILY TPR-like 224 447 IPR011990 GO:0005515
Spst9g01188 690 MobiDBLite consensus disorder prediction 54 68 - -
Spst9g01188 690 MobiDBLite consensus disorder prediction 31 53 - -
Spst9g01188 690 SUPERFAMILY Thioredoxin-like 583 686 IPR036249 -
Spst9g01188 690 Pfam Thioredoxin 621 683 IPR013766 -
Spst9g01188 690 Gene3D Tetratricopeptide repeat domain 223 577 IPR011990 GO:0005515
Spst9g01188 690 SUPERFAMILY TPR-like 464 574 IPR011990 GO:0005515
Spst9g01188 690 CDD TRX_family 599 684 - -
Spst9g01188 690 ProSiteProfiles TPR repeat profile. 225 258 IPR019734 GO:0005515
Spst9g01188 690 SMART tpr_5 492 525 IPR019734 GO:0005515
Spst9g01188 690 SMART tpr_5 259 292 IPR019734 GO:0005515
Spst9g01188 690 SMART tpr_5 293 319 IPR019734 GO:0005515
Spst9g01188 690 SMART tpr_5 225 258 IPR019734 GO:0005515
Spst9g01188 690 SMART tpr_5 526 559 IPR019734 GO:0005515
Spst9g01188 690 SMART tpr_5 458 491 IPR019734 GO:0005515
Spst9g01188 690 SMART tpr_5 412 445 IPR019734 GO:0005515
Spst9g01188 690 Pfam Tetratricopeptide repeat 418 492 - -
Spst9g01188 690 Pfam Tetratricopeptide repeat 505 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01188 Spst-Chr9 10982931 10986187 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01188 K09527 - gmx:100814381 1160.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01188 9 10982931 10986187 Spst9g01188 9 10982931 10986187 ECH
Spst8g01246 8 11513502 11516665 Spst9g01188 9 10982931 10986187 PCT