Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01246 ATGGCAGCGAAGGCAAAGAACAACAAGGTGGGGAGTGAATTGGGGTGTGGCCTCATGGGAATTCTCCATCTCAAAAGCCACAAGCTGAGAAAAGCAACTGTTCACTCCCTGCCCTTGAAGAATCCGCAGAGTGATGATGATCGAAAAAGTGAAGAACCAAAGAAGACCCCAAATGAAGAAGAATCAAAGGTTCCAAAAAAAGGTTACACCAACCCTGAGCCACACAGACTCAGTGGTGCAGAACAGAAACATGCCACAAAGAGTGCCTCTGTTCACCAACAACAACCTTGTACAAATCGAAACAATCAACATCATAGGCATTCAGATGTTGCTGCAAGAAGCTCAACATCATCATCATCCCCGAGAACTTCAATTTCAACTCACACTAAGGTTCAACAAAACAAGGAGAAGAATCATGAGCGCAAGCCACATAGAGACCCCACTGGAAATTCTCTAGCACTTGCTAGGATAAGTACTAGCAATGAAAACAATAAGTCACAATTGAAGCTCACTGGGAATTTGCTTGTGAATAACACCCCAAGGAGAAAGAGTGTGGAGTACATGCCTAAAAATGTAGAGTTCAACTCTGTGCCTAATTCCTACTCCAATGCAAGCGCAGGCTTAATGGGAAATATCATGAGGAGGAACAGCATTGGCAATGAGGTTGGACAGTTTTTAAGTCCAAGGCAGAAAAAAGTGGACCCTGAGGTGTTGAAATCCGTGGGAAATGAAGCATACAAGCAGGGAAGATTTGAAGAGGCTTTGACTTTGTATGACCGAGCAATTGCACTTGATTCAAATAAGGCAACCTATCATTGCAACAAGAGTGCAGCTTTAATTGGTTTAGGAAGGCTTCAACAAGCAATTTTTGAGTGTGAGGAATCTATCAAACTGGACCCTTCGTATGTCAGAGCCCACAACCGTTTGGCGACAATATATTTCAGGTTGGGAGAAGCAGAAAAAGCACTTGATTGCAATCAATCAACCGGATGTGCTGATTCAATACATGCCTTCCAAGCTCAGTCTCTTCAAAATCACCTTAACAAATGCAGAGAAGCACGGAAAGTCAATGCATGGAGTGATATACTAAAGGAAACACAGTGTGCCATATCCTTAGGTGCTGATTCATCTCCACAGGTCTATGCTTTACAAACTGAAGCCTTGCTGAAGCTCCTAAGATATCAAGAGGCTTATGCCATCTATGAAAATATGCCAAAATTTCCACTTGATTGGTGTACCAAGGTATTTGGCCCGGCTCGCAGCGCTTACCTGTTGATGATAGGGGCACTGGTTTACCTGGCCGCTGGCAGGTTCGAGGAAGCTGTAACAGCAGCTCAGCAAGCAGCTAAAGTTGATCCAGGCAATAGAGAGGTGAATGCAGTGGTAAGGAGGGCCAGAGCAGCAACATCAGCTAGAATGAGTGGAAACTTGCTCTTTAAGGCCTCAAAATTCACCGAAGCATGTGCCGTCTACAACGAAGGACTAGAACATGATCCTCACAACTCAGTTCTGCTATGCAACAGAGCTGCTTGTCGTTCGAAGCTTGGCCAATATGAGAAAGCAATTGAAGATTGTAACGCGGCACTTATGTTTCAGCCAGGTTATAGCAAAGCAAGGTTAAGGAGGGCAGATTGCAATGCCAAGTTGGAACGGTGGGAAGCTGCTATTCAAGACTATGAAATGCTATTGAGAGAAAGGCCAGGGGACGAGGAAGTGGGAAGGGCTTTGTTTGAAGCTCAGCTCCAACTCAAGATGCTGCGAGGTGAAGATATTAAGGACTTGAAATTTGGTTCAAACTTGGTTTTCATCTCAAGTAATGATCGGTTCAGACATTATGTAACTTCACCTGGGATGGCTGTGGTTCTCTTTTGCAACAAGGCAACCCACAAGAAAGTGTTACTTATGTTGGAGCAAACAAGCAAAAGATTCCCATCAGTTCATTTCCTCAAGGTGGAGATCGAAGACCACCCTTACTTAGCAAAGTCAGAAGGTGTGTACTCCATCCCAGTCTTCAAAATATACAAAAACGGATCAAGAGTTAAAGAAATTTCAGGCAACAACCACGAGTTGTTAGAAAGATCAGTTGAGTTATATAGCAGCTGA 2103 0.4389 MAAKAKNNKVGSELGCGLMGILHLKSHKLRKATVHSLPLKNPQSDDDRKSEEPKKTPNEEESKVPKKGYTNPEPHRLSGAEQKHATKSASVHQQQPCTNRNNQHHRHSDVAARSSTSSSSPRTSISTHTKVQQNKEKNHERKPHRDPTGNSLALARISTSNENNKSQLKLTGNLLVNNTPRRKSVEYMPKNVEFNSVPNSYSNASAGLMGNIMRRNSIGNEVGQFLSPRQKKVDPEVLKSVGNEAYKQGRFEEALTLYDRAIALDSNKATYHCNKSAALIGLGRLQQAIFECEESIKLDPSYVRAHNRLATIYFRLGEAEKALDCNQSTGCADSIHAFQAQSLQNHLNKCREARKVNAWSDILKETQCAISLGADSSPQVYALQTEALLKLLRYQEAYAIYENMPKFPLDWCTKVFGPARSAYLLMIGALVYLAAGRFEEAVTAAQQAAKVDPGNREVNAVVRRARAATSARMSGNLLFKASKFTEACAVYNEGLEHDPHNSVLLCNRAACRSKLGQYEKAIEDCNAALMFQPGYSKARLRRADCNAKLERWEAAIQDYEMLLRERPGDEEVGRALFEAQLQLKMLRGEDIKDLKFGSNLVFISSNDRFRHYVTSPGMAVVLFCNKATHKKVLLMLEQTSKRFPSVHFLKVEIEDHPYLAKSEGVYSIPVFKIYKNGSRVKEISGNNHELLERSVELYSS 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01246 700 Gene3D Glutaredoxin 595 699 - -
Spst8g01246 700 ProSiteProfiles TPR repeat profile. 235 268 IPR019734 GO:0005515
Spst8g01246 700 Pfam Tetratricopeptide repeat 538 568 IPR019734 GO:0005515
Spst8g01246 700 MobiDBLite consensus disorder prediction 132 147 - -
Spst8g01246 700 SUPERFAMILY TPR-like 235 457 IPR011990 GO:0005515
Spst8g01246 700 SMART tpr_5 536 569 IPR019734 GO:0005515
Spst8g01246 700 SMART tpr_5 235 268 IPR019734 GO:0005515
Spst8g01246 700 SMART tpr_5 303 335 IPR019734 GO:0005515
Spst8g01246 700 SMART tpr_5 422 455 IPR019734 GO:0005515
Spst8g01246 700 SMART tpr_5 468 501 IPR019734 GO:0005515
Spst8g01246 700 SMART tpr_5 502 535 IPR019734 GO:0005515
Spst8g01246 700 SMART tpr_5 269 302 IPR019734 GO:0005515
Spst8g01246 700 Pfam Tetratricopeptide repeat 429 501 - -
Spst8g01246 700 Pfam TPR repeat 242 277 - -
Spst8g01246 700 Pfam Tetratricopeptide repeat 504 534 IPR001440 GO:0005515
Spst8g01246 700 Pfam Thioredoxin 630 690 IPR013766 -
Spst8g01246 700 Coils Coil 542 562 - -
Spst8g01246 700 Gene3D Tetratricopeptide repeat domain 234 587 IPR011990 GO:0005515
Spst8g01246 700 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 4 696 IPR044534 -
Spst8g01246 700 ProSiteProfiles TPR repeat profile. 422 455 IPR019734 GO:0005515
Spst8g01246 700 SUPERFAMILY TPR-like 472 584 IPR011990 GO:0005515
Spst8g01246 700 MobiDBLite consensus disorder prediction 41 70 - -
Spst8g01246 700 MobiDBLite consensus disorder prediction 83 101 - -
Spst8g01246 700 SUPERFAMILY Thioredoxin-like 587 694 IPR036249 -
Spst8g01246 700 CDD TRX_family 609 687 - -
Spst8g01246 700 MobiDBLite consensus disorder prediction 33 151 - -
Spst8g01246 700 MobiDBLite consensus disorder prediction 112 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01246 Spst-Chr8 11513502 11516665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01246 283 571 Glycosyltransferase AT3G04240 23.151 1.84e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01246 K09527 - gmx:100782846 1107.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01246 8 11513502 11516665 Spst9g01188 9 10982931 10986187 PCT