Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01183 ATGGACGCCCACATCAGTGTCCAGATGTCAGACGACAACACGACGAGAGCAGCAGAGGAGGGAGAAACCAGGTTTGTTCGGATTCCGGATGCACCCAATCCGACACCAACACCAACACCACTCCGCATCCTTCACCCTGACCATGTGGCTGTTGGGTCCCCCCTACCCAGGGTTCCTCCATATTCACCACCACCTCCCTCTCCCAAAGTATGCTTGGACCATGACCCTTCCACTGTCTCTCACACACACACCCACACCAACTGGAACCATGATCCCTCCTTCCTTTCCGATTTCTCCAAAATGAATCTCTATGATGAAACCCAGACCCGTGTGGACCCTTACCCTTCTTATTTTAATCAAACAGGAACCCTTCCAAATCCTTATTTCAATCAAACAGGAACCCTCCCATACCATCACCATGTTAACAATGCCCGTTTGCTCAATGAACAAGGACCCCTTCCCTATCATGTTAACAACGGGGGTTTGTTCAACGAGACACGGAATCTTCCCTGCCACCAGCATGTTAACAACACGGGGTTTTTCAACGAAACCCTCGTCCCGTATCACCAGCATGTTAATAATGCGGGGCTGTTGGATAAAGGTTACACTTTTGATACCCCAGGCGATCAAGTCAACCATGTCTATCCTCATCACCTGGATCAGAGGAGAGATCAGGTACAGGGCACAAGCAGTGGCAGCTGTCAGATGCTTCGTGATAGTTTTATGGCTCCACATTCTCTCGAAGGGTTCAAAAACCCCGTCAGGTTATCTCCTGCTATGAATTCCAATGCTAATAATCCATCACATTATTATGTTGCAACCACCGAGAAGACTGAACTTCCTCACTTTCTGCCTCCGAGGCGAGTTGGGGGAGACCCTGTAGCTTTTAGGTGTGACAATAGCATTATCTTACAAGGGAGAGATGCAAGACCTTGCTTTGAGAACAGGTATGGTTCCCCTTATAGAAGGGGTCTTCCCCGTGATGAGTTTGGTGTGAATGGGAGTGTTTCCAAGAACTTTTTTACTGGTGGTCCTTCTGGTCAAAACATTGGCGAATTCTCACTGCCCATGCTGCGTGATTTTTATTCTGTGCCTGACTCTGAGTGTAACATTTACAACCTGGCAAAGGATCAGAACGGTTGTCGTTTTCTGCAGCGGATGGTTGATGAGGGAAGCTTCGGAGATATGTGTGTGGTATTTGAGGGAATCATTGGTAATGTTGTTGAACTTATGGTGGACTCTTTTGGGAATTATCTCGTGCAAAAGCTGCTCGATTTTTGCACCGATGACCAACGACTGCAGATTGTGCTCATGTTGACTAATCGACCTGGCCAGCTCGTTAGAATCTCTTTGAATACTCACGGCACGCGCGTGGTGCAGAAGTTGATTGAGACACTCGACTCCGATGATCAAATTTCATTGGTCAAGTCTGCCATTCAACCGGGTTTTCTTGATCTCATTAAGGATTTGAATGGAAATCACGTCATTCAACGTTGCTTGCAATGCTTCAGCTCTCAAGATAATCAGTTTATCTTTGATGCTTCTGTGAAGTTTTGCATTGAAATAGCTACTCATCAACATGGATGCTGTGTCCTGCAACGCTGTATTTATTATTCTACGGGTAAGAATCGAGATAGGCTGATCTCAGAAATCTGCAAGCATGGACTTCTTCTCGCTCAGGATCCATTTGGCAGCCATGTAGTTGAAAAATGTCTGAAGAACATTGGAGATAGCAGATCCAGAATAGTTCGAGAATTGTTGGCTGCTCCTCATTTTGAACGACTTTTACAGGATCCATATGCTAACTATGTTATTCAATCTGCTCTTACTGTCACTAAGGGACTTCTGCATGCATCTCTGGTTGATGCAATTCGTAACTACAAAATGTTGCGCACCAGTCCATTCTGCAAAAGGATTTTTTCGGGAAATTTGCTACGGAAGTGA 1944 0.4588 MDAHISVQMSDDNTTRAAEEGETRFVRIPDAPNPTPTPTPLRILHPDHVAVGSPLPRVPPYSPPPPSPKVCLDHDPSTVSHTHTHTNWNHDPSFLSDFSKMNLYDETQTRVDPYPSYFNQTGTLPNPYFNQTGTLPYHHHVNNARLLNEQGPLPYHVNNGGLFNETRNLPCHQHVNNTGFFNETLVPYHQHVNNAGLLDKGYTFDTPGDQVNHVYPHHLDQRRDQVQGTSSGSCQMLRDSFMAPHSLEGFKNPVRLSPAMNSNANNPSHYYVATTEKTELPHFLPPRRVGGDPVAFRCDNSIILQGRDARPCFENRYGSPYRRGLPRDEFGVNGSVSKNFFTGGPSGQNIGEFSLPMLRDFYSVPDSECNIYNLAKDQNGCRFLQRMVDEGSFGDMCVVFEGIIGNVVELMVDSFGNYLVQKLLDFCTDDQRLQIVLMLTNRPGQLVRISLNTHGTRVVQKLIETLDSDDQISLVKSAIQPGFLDLIKDLNGNHVIQRCLQCFSSQDNQFIFDASVKFCIEIATHQHGCCVLQRCIYYSTGKNRDRLISEICKHGLLLAQDPFGSHVVEKCLKNIGDSRSRIVRELLAAPHFERLLQDPYANYVIQSALTVTKGLLHASLVDAIRNYKMLRTSPFCKRIFSGNLLRK 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01183 647 SUPERFAMILY ARM repeat 368 640 IPR016024 -
Spst9g01183 647 ProSiteProfiles Pumilio RNA-binding repeat profile. 402 438 IPR001313 GO:0003723
Spst9g01183 647 SMART pum_5 402 437 IPR001313 GO:0003723
Spst9g01183 647 SMART pum_5 441 476 IPR001313 GO:0003723
Spst9g01183 647 SMART pum_5 366 401 IPR001313 GO:0003723
Spst9g01183 647 SMART pum_5 514 549 IPR001313 GO:0003723
Spst9g01183 647 SMART pum_5 587 622 IPR001313 GO:0003723
Spst9g01183 647 SMART pum_5 478 513 IPR001313 GO:0003723
Spst9g01183 647 SMART pum_5 550 584 IPR001313 GO:0003723
Spst9g01183 647 MobiDBLite consensus disorder prediction 1 20 - -
Spst9g01183 647 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 563 640 - -
Spst9g01183 647 CDD Pumilio 369 641 IPR033712 GO:0003723
Spst9g01183 647 ProSiteProfiles Pumilio RNA-binding repeat profile. 514 549 IPR001313 GO:0003723
Spst9g01183 647 Pfam Pumilio-family RNA binding repeat 370 393 IPR001313 GO:0003723
Spst9g01183 647 Pfam Pumilio-family RNA binding repeat 519 552 IPR001313 GO:0003723
Spst9g01183 647 Pfam Pumilio-family RNA binding repeat 445 475 IPR001313 GO:0003723
Spst9g01183 647 Pfam Pumilio-family RNA binding repeat 595 610 IPR001313 GO:0003723
Spst9g01183 647 Pfam Pumilio-family RNA binding repeat 406 436 IPR001313 GO:0003723
Spst9g01183 647 Pfam Pumilio-family RNA binding repeat 483 513 IPR001313 GO:0003723
Spst9g01183 647 Pfam Pumilio-family RNA binding repeat 557 587 IPR001313 GO:0003723
Spst9g01183 647 ProSiteProfiles Pumilio RNA-binding repeat profile. 478 513 IPR001313 GO:0003723
Spst9g01183 647 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 345 647 IPR033133 GO:0003723
Spst9g01183 647 ProSiteProfiles Pumilio RNA-binding repeat profile. 441 476 IPR001313 GO:0003723
Spst9g01183 647 ProSiteProfiles Pumilio RNA-binding repeat profile. 550 588 IPR001313 GO:0003723
Spst9g01183 647 Gene3D - 358 643 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01183 Spst-Chr9 10914682 10917492 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01183 - - pvu:PHAVU_009G030400g 1004.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01183 9 10914682 10917492 Spst9g01183 9 10914682 10917492 ECH
Spst8g01242 8 11457167 11466050 Spst9g01183 9 10914682 10917492 PCT