Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01242 ATGGTGAAAAGATTTGCAAGAAAATACAAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGTGCCGATTTTGTGTGAACCGTACACACTATCACACACAACCTTATTCTACACACACTACTCTGTCAAACCCAATCGAAGATCAAAAACCTCCTTCTGCGATTCTTGCTCCTTCACTTTCTCACAAAGAGATCAAAAGTTCTCGCGAAACTGCCATGAGAAACGAAGAGTTTGGAGCTTGTTTGAACGGGTTTCCTAATCTTCACCATTCCAACCTCATGCCACAACCTTCCACTGCTTCCACCAACGCCTTCCCGATGTGGGGCGAGAACAACATGATCAACGACAACCATGATGTTGATGTGTTGTTGTCTAATGATTTTGCTAGAATGAGTATTTTAAATGAACAAGGGAATGGTGGAAACAAAACCAGAGGACATGGACATGGACATGGATATGGTGTTGATGTTATGGACTCATGGTACACACATGCATTCCCACACTCACAGTCCAACTCACACTCACTCTCACAAACACCTAGTAATTCTTTGGATAGATATGCACATGTTGGTGAAGAAAGGGGTTCCCCATGGTCTGTTTGGGGTGTGACGGCTTCTTCTGATGTCAAGGGGCACACTTTTGGACCCCCAGTGGAGTCTAACCAAAGGAGGAGCACTTGTTATGGAAACTTTCAAATGCCGAACCCGATTCTTGCCAGAGGGGGTTTTGCAATGGATTATGATGTGAGTAGTCCTTTCATGCTCTCTCAAAGTCAATCCATGATGCAACAACCCAAGCTTGCTATGAATGTGAACACTCCATCGCGGCATTTTTTCCCTGCAGTGAAAGAAAGAGCATCGACAAGGGTGGTTGTAGCCCCCAGTGGTGAATTTTCCCATTCTAGAGGGGACCCTATGGCGTTTCAATGTGATGGTGGTTTTATCATGCAAGAGAAGGATGTAATATGTTGTGTTGGTGGTAGAGGGTGCAATTCTTTGAGGGGTTACAGAGAGAGTTTACCTTCGCCAGCTCACGCAGTGGCAGATGAAGTTCCTCAATTAATTTCTTCTCGTGTTCCTACCAGACAGGAAAAGAATGGCGCTCTTGCAAGTGATGTTTCTCTTTCTCCGAGGCCATTGTTGTTCAATTTTGGCCCTTTGGTTAAGTTCGAAGGTTACATTTACCACCTGGCAAAGGATCAGAACGGTTGCCGTTTTTTACAGAGGATGGTTGATGAGGGCACCTCTGAAGATGCACAAATAGTGTTTAATGGAGTTATAGATGATGTTGTTGAGCTTATGATGGACCCTTTTGGGAATTACCTTGTGCAAAAGCTGATTGATGTGTGTGCAGAAGATGAAAGGCTGCAGATTGTGTCAATGTTGACTAAAGAACCAGGGCAACTAGTCAAAACCTCTTTCAATACACACGGGACTCGGGTGGTTCAGAAGTTGATTGCGACTGTCAACTCTAGAAATCAAATTGCAATGCTGAGGTCTGCCATTCAACCTGATTTTCTTGATCTTATTAAGGATCTGAATGGAAATCATGTTATACAACGTTGCTTGCAATACTTTAGTTGTAACGATAATGAGAGGCAGGAGTTTGTTGTAAACTATCATGGTTACGGTTATGATAGATGGTTGTATAAACATAAAGGAAATACTATTTCAGAGCTTTCTAGAAATTTTATTTTTGATGCTGCTACAAATTTCTGTGTCGACATAGCTACTCATGAACATGGGTGTTGTGTACTACAACGTTGCATTGATTACTCCATCGGAAAGTACCAAGATAAGCTGATAAAGGAAATATGTAGACATGGGCTTATTCTTGCTCAAGATCCATTTGGAAATTACGTTGTTCAGTATATTATAGAGATGGAGATATCAAGTGCCTCATCCAAGCTGCATTCTCAATTCAAAGGGAATTACGTGAACCTTTCCATGCAAAAATTTAGCAGTCATGTGGTTGAAAAATGCCTCATGCATATTGCAGAGAGCAGGTCCAGAATAGTCCAAGAAATGTTATCGTTTCCTCACTTTGAGCGGTTATTAGCAGACCCATATGCCAATTATGTTGTTCAACGTGCTCTGGGAGTGACCAAGGGTTCTCTCCATACATCTCTAGTGGAAGCAGTTCGACCCCACAAAATCTTGCGCACCAACCCTTATTGCAAGAGGATTTTCTCGAGGAACCTACTTAATAAGTGA 2232 0.427 MVKRFARKYKLVERKALNLVVVGSSPTCRFCVNRTHYHTQPYSTHTTLSNPIEDQKPPSAILAPSLSHKEIKSSRETAMRNEEFGACLNGFPNLHHSNLMPQPSTASTNAFPMWGENNMINDNHDVDVLLSNDFARMSILNEQGNGGNKTRGHGHGHGYGVDVMDSWYTHAFPHSQSNSHSLSQTPSNSLDRYAHVGEERGSPWSVWGVTASSDVKGHTFGPPVESNQRRSTCYGNFQMPNPILARGGFAMDYDVSSPFMLSQSQSMMQQPKLAMNVNTPSRHFFPAVKERASTRVVVAPSGEFSHSRGDPMAFQCDGGFIMQEKDVICCVGGRGCNSLRGYRESLPSPAHAVADEVPQLISSRVPTRQEKNGALASDVSLSPRPLLFNFGPLVKFEGYIYHLAKDQNGCRFLQRMVDEGTSEDAQIVFNGVIDDVVELMMDPFGNYLVQKLIDVCAEDERLQIVSMLTKEPGQLVKTSFNTHGTRVVQKLIATVNSRNQIAMLRSAIQPDFLDLIKDLNGNHVIQRCLQYFSCNDNERQEFVVNYHGYGYDRWLYKHKGNTISELSRNFIFDAATNFCVDIATHEHGCCVLQRCIDYSIGKYQDKLIKEICRHGLILAQDPFGNYVVQYIIEMEISSASSKLHSQFKGNYVNLSMQKFSSHVVEKCLMHIAESRSRIVQEMLSFPHFERLLADPYANYVVQRALGVTKGSLHTSLVEAVRPHKILRTNPYCKRIFSRNLLNK 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01242 743 ProSiteProfiles Pumilio RNA-binding repeat profile. 395 430 IPR001313 GO:0003723
Spst8g01242 743 SUPERFAMILY ARM repeat 395 737 IPR016024 -
Spst8g01242 743 Pfam Pumilio-family RNA binding repeat 476 504 IPR001313 GO:0003723
Spst8g01242 743 Pfam Pumilio-family RNA binding repeat 512 540 IPR001313 GO:0003723
Spst8g01242 743 Pfam Pumilio-family RNA binding repeat 694 705 IPR001313 GO:0003723
Spst8g01242 743 Pfam Pumilio-family RNA binding repeat 436 468 IPR001313 GO:0003723
Spst8g01242 743 Pfam Pumilio-family RNA binding repeat 400 430 IPR001313 GO:0003723
Spst8g01242 743 Pfam Pumilio-family RNA binding repeat 618 633 IPR001313 GO:0003723
Spst8g01242 743 Pfam Pumilio-family RNA binding repeat 579 612 IPR001313 GO:0003723
Spst8g01242 743 Pfam Pumilio-family RNA binding repeat 650 682 IPR001313 GO:0003723
Spst8g01242 743 ProSiteProfiles Pumilio RNA-binding repeat profile. 574 609 IPR001313 GO:0003723
Spst8g01242 743 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 173 738 - -
Spst8g01242 743 ProSiteProfiles Pumilio RNA-binding repeat profile. 610 645 IPR001313 GO:0003723
Spst8g01242 743 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 370 743 IPR033133 GO:0003723
Spst8g01242 743 SMART pum_5 683 718 IPR001313 GO:0003723
Spst8g01242 743 SMART pum_5 646 680 IPR001313 GO:0003723
Spst8g01242 743 SMART pum_5 395 430 IPR001313 GO:0003723
Spst8g01242 743 SMART pum_5 470 505 IPR001313 GO:0003723
Spst8g01242 743 SMART pum_5 574 609 IPR001313 GO:0003723
Spst8g01242 743 SMART pum_5 610 645 IPR001313 GO:0003723
Spst8g01242 743 SMART pum_5 431 466 IPR001313 GO:0003723
Spst8g01242 743 SMART pum_5 507 544 IPR001313 GO:0003723
Spst8g01242 743 ProSiteProfiles Pumilio RNA-binding repeat profile. 431 466 IPR001313 GO:0003723
Spst8g01242 743 Gene3D - 389 741 IPR011989 -
Spst8g01242 743 ProSiteProfiles Pumilio RNA-binding repeat profile. 681 718 IPR001313 GO:0003723
Spst8g01242 743 ProSiteProfiles Pumilio RNA-binding repeat profile. 507 545 IPR001313 GO:0003723
Spst8g01242 743 CDD Pumilio 398 738 IPR033712 GO:0003723
Spst8g01242 743 ProSiteProfiles Pumilio RNA-binding repeat profile. 467 505 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01242 Spst-Chr8 11457167 11466050 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01242 - - pvu:PHAVU_008G173000g 1055.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01242 8 11457167 11466050 Spst8g01242 8 11457167 11466050 ECH
Spst8g01242 8 11457167 11466050 Spst9g01183 9 10914682 10917492 PCT