Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01174 ATGAGAGGTGGTGGTGGTGGTGGATGCAGCATAGTGTGGTTCAGAAGAGATCTGAGGGTAGAGGACAACCCTGCACTGGCGGCAGGTGTAAGAGCTGGTGCCGTGGTTCCAGTTTTCATATGGGCACCTGAAGAAGAAGGCCAGTACTACCCTGGTAGAGTCTCCAGGTGGTGGCTCAAACAAAGTTTGGCTCATCTTGATTCTTCTCTCAGGAATCTTGGCACTCCTCTCATCACTAAGCGATCCACTGATACTGTTTCTTCTCTCCTTGAGTTTGTTAAGTCAACTGGAGCTACTCAACTCTTTTTTAACCATTTATATGATCCCCTTTCACTTGTAAGGGATCACCGAGCTAAAGAGGTTCTGAATGCTCAGGGCATAACAGTACGTTCCTTCAACGCGGATTTACTGTATGAACCGTGGGATGTGAATGATGTCCATGGTCGACCATTCACAACTTTTGCTGCTTTCTGGGACAGATGTCTAAGCATGCCTTACGACCCCGAGTCACCTCTTCTCCCACCCAAAAGGATAATTCCAGATAGTCTTAAGGAGGTAGTGGTTTTAACCTCAACCAATATGGAAGAGGACATGTGGTTAATAAAAGTATTCCGGGGTAGTGGTGATGTGTCGAGATGTCCATGTGATGCATTGGTGTTTGAAGATGAATCAGAGAAGGCAAGCAATGCACTTCTTGCTCGAGCATGGTCACCGGGGTGGAGCAATGCTAACAATGCATTGACCGCTTTCATAAATGGTCCATTGATAGAGTACGCAGTAAATTGCAGGAAGGCTGATAGTGCCACTACCTCACTTCTCTCACCCCGTTTGCACTTTGGTGAGTTGAGTGTCAAGAAGGTCTTCCATCTTGTCCGCATCAAACAACTTTTGTGGGCCAACGAAGGAAACAAAGCCAGTGAAGAGAGTGTGAACTTGTTCCTTAAATCTATTGGTCTTAGAGAATATTCGAGGTACATTAGTTTCAACCACCCCTACAGTCATGAAAGGCCTCTTCTAGGCCACCTCAAGTTCTTTCCTTGGGTTGTAAATGAGGGTTATTTTAAGGCATGGAGACAAGGCAGAACTGGGTACCCTTTGGTGGATGCTGGGATGAGGGAGTTGTGGGCCACTGGTTGGCTGCATGATCGGATACGTGTTGTAGTTTCCAGTTTCTTTGTGAAGGTTCTGCAGCTTCCTTGGAGATGGGGAATGAAATATTTCTGGGACACCCTTTTGGATGCTGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCTGGTACACTCCCTGATGGTCGTGAATTTGACCGAATAGATCATCCGCAGTTTGAGGGCTACAAATTCGACCCCAATGGAGAATATGTGCGACGCTGGCTTCCAGAACTTGCGAGATTACCTACTGAGTGGATACATCATCCTTGGAATGCACCAGAGTCAGTGCTCCAAGCTGCTGGAATTGAGCTAGGATCGAACTATCCTCTTCCAATTGTGGGAATAGATGCCGCAAAAACCAGATTACAAGAGGCACTATCAGAAATGTGGCAACTAGAGGCAGCTTCAAGAGCTGCAATGGAAAATGGGACTGAGGAAGGACTTGGAGACTCTTCTGAATCAATTCCTGCTGCTTTTCCTCAAGACACTCAAATGGAGGAAACTCATGAACCTGTTAGGAACAATCCCCTTCCTGTTGCTCGGCGCTATCAGGATCAGATGGTTCCAAGCATCACTTCAACCCTGCTGAGAATAGAAGAGGAAGAAACTACTTCTGATCTTAGAAACTCAGCAGAAGAGAGCAGCAGAGCTGAAGTGCCAATAAATGTAGATGCACAACAGAACGCAGAAGTTGCATCGAACGAACGGATGTTGGATACTGCTTATAGGAATACACAAGTACAATACAACACTACAGTAGAGCTGAGAAATGTAGCTGAAGATTCAGTCTTAGAATCTTCCAGTGGTACCAGGAGAGAAAGGGATGGAGGTGTAGTTCCAGTATGGTCCCCCCCAGCTTCCAGTTACTCAGAACAATTTGTAGGAGATGAAAATGGTATTACAAGTGGTTCATCTTACTTGCAAAGGCATCCTCAGTCTCACCAATTGCTGAACTGTAGGCAGCTACCTCAGACCGGCTACAGTGAGTTTCAACTACTTGATGAAGGCACGAAGAAAAGAGCTTTTGCCGACTACCAAGACGAACAGCATGGACTATCCGAGTCCAAGTACAAGTTCAATCCTTTCTCAATTTTGATTGCACCGGTTGTGATTCTGGACCCGGGAAGTGGGTTTCGTTCCAAGTTTGAATTCAAGGTGTCTGCCAAGTGTTGTGCTGTTTTAAGGCTTCCTACTCTCAGGTAA 2358 0.4606 MRGGGGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVPVFIWAPEEEGQYYPGRVSRWWLKQSLAHLDSSLRNLGTPLITKRSTDTVSSLLEFVKSTGATQLFFNHLYDPLSLVRDHRAKEVLNAQGITVRSFNADLLYEPWDVNDVHGRPFTTFAAFWDRCLSMPYDPESPLLPPKRIIPDSLKEVVVLTSTNMEEDMWLIKVFRGSGDVSRCPCDALVFEDESEKASNALLARAWSPGWSNANNALTAFINGPLIEYAVNCRKADSATTSLLSPRLHFGELSVKKVFHLVRIKQLLWANEGNKASEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDHPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKTRLQEALSEMWQLEAASRAAMENGTEEGLGDSSESIPAAFPQDTQMEETHEPVRNNPLPVARRYQDQMVPSITSTLLRIEEEETTSDLRNSAEESSRAEVPINVDAQQNAEVASNERMLDTAYRNTQVQYNTTVELRNVAEDSVLESSSGTRRERDGGVVPVWSPPASSYSEQFVGDENGITSGSSYLQRHPQSHQLLNCRQLPQTGYSEFQLLDEGTKKRAFADYQDEQHGLSESKYKFNPFSILIAPVVILDPGSGFRSKFEFKVSAKCCAVLRLPTLR 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01174 785 FunFam Deoxyribodipyrimidine photo-lyase 331 520 - -
Spst9g01174 785 NCBIfam cryptochrome photoreceptor 198 512 IPR014134 GO:0009785|GO:0009882
Spst9g01174 785 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 8 137 IPR006050 -
Spst9g01174 785 ProSitePatterns DNA photolyases class 1 signature 1. 362 374 IPR018394 -
Spst9g01174 785 MobiDBLite consensus disorder prediction 546 615 - -
Spst9g01174 785 Gene3D - 137 323 - -
Spst9g01174 785 MobiDBLite consensus disorder prediction 584 598 - -
Spst9g01174 785 Pfam Blue/Ultraviolet sensing protein C terminal 541 656 IPR020978 -
Spst9g01174 785 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 331 532 - -
Spst9g01174 785 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 10 181 IPR036155 -
Spst9g01174 785 PRINTS DNA photolyase signature 382 400 IPR002081 -
Spst9g01174 785 PRINTS DNA photolyase signature 421 435 IPR002081 -
Spst9g01174 785 PRINTS DNA photolyase signature 362 378 IPR002081 -
Spst9g01174 785 PANTHER CRYPTOCHROME 9 520 IPR002081 -
Spst9g01174 785 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 224 518 IPR036134 -
Spst9g01174 785 MobiDBLite consensus disorder prediction 645 668 - -
Spst9g01174 785 FunFam Cryptochrome 1 11 148 - -
Spst9g01174 785 ProSitePatterns DNA photolyases class 1 signature 2. 382 401 IPR018394 -
Spst9g01174 785 Coils Coil 500 520 - -
Spst9g01174 785 Gene3D HUPs 11 236 IPR014729 -
Spst9g01174 785 Pfam DNA photolyase 10 165 IPR006050 -
Spst9g01174 785 Pfam FAD binding domain of DNA photolyase 313 511 IPR005101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01174 Spst-Chr9 10753459 10768496 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01174 K12118 - gmx:100797839 1270.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01174 9 10753459 10768496 Spst9g01174 9 10753459 10768496 ECH
Spst8g01236 8 11375005 11379013 Spst9g01174 9 10753459 10768496 PCT