Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01236 ATGTCAGGTGGAGGATGCAGCATAGTGTGGTTTAGGAGAGATCTGAGGGTGGAGGATAACCCTGCCCTGGCTGCAGGAGTGAGAGCAGGAGCTGTGGTTGCTGTTTTTATATGGGCTCCTGAGGAAGAGGGTCAATACTACCCTGGCAGGGTCTCTAGGTGGTGGCTCAAACAAAGCTTGGCTCACCTTGATTTCTCTTTGAGAAGCCTTGGCACTCCCCTAATCACCAAGCGTTCCACTAACAGTGTTTCTTCTCTATTAGAAGTTGTTAAGTCCACTGGGGCTACTCAACTCTTTTTCAACCATTTATATGATCCATTGTCACTTGTGAGGGATCATCGAGCAAAGGAAGTTCTGACTTCTCAAGGCATTACCGTACGTTCATTCAACTCCGACTTATTGTATGAACCATGGGATGTGAATGATGCTCATGGCCAACCATTCACAACTTTTTCTGCTTTTTGGGAAAGATGCCTCAGCATGCCTTATGACCCACAAGCACCTCTTCTGCCACCTAAAAGGATTATTCCAGGTGATGCTTCAAGGTGCCCTTGTGATACATTGGTGCTTGAAGATGAACTAGAGAAGGCAAGCAATGCGCTTCTTTCTCGAGCATGGTCACCGGGATGGAGCAATGCTGACAAGGCATTGACAGCATTTATAAATGGTCCTCTGATTGAATACTCAAAGAATCGTAGGAAGGCTGATAGTGCCACAACCTCATTTCTCTCACCACATTTGCACTTTGGTGAGGTGAGTGTAAGGAAAGTTTTCCATCTTGTCCGCATTAAGCAAGTGTTTTGGGCCAATGAAGGAAACAAGGCTGGTGAAGAGAGTGTGAACTTGTTTCTCAAGTCTATTGGTCTTAGAGAGTATTCTAGGTACATTAGTTTCAACCACCCCTACAGTCATGAGAGGCCCCTTCTAGGCCACCTGAAGTTTTTCCCTTGGGTGGTGAATGAAGGGTACTTCAAGGCTTGGAGACAAGGCAGAACAGGGTACCCTTTGGTGGATGCTGGAATGAGAGAGTTGTGGGCAACTGGTTGGTTGCATGATCGGATACGTGTTGTGGTTTCGAGTTTCTTTGTGAAGGTTCTGCAGCTTCCCTGGAGATGGGGAATGAAGTATTTCTGGGATACCCTTTTGGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCTGGTACTCTCCCTGATGGTCGCGAATTTGATCGGATAGATAATCCACAGTTTGAGGGGTACAAATGTGACCCAAATGGAGAATATGTACGACGCTGGCTTCCTGAACTTGCTAGATTACCAACTGAATGGATACACCATCCATGGAATGCACCAGAGTATGTACTTCAAGCTGCTGGAATTGAACTTGGTTCAAATTATCCTCTTCCCATTGTGGGAATAGATGCTGCAGAAGTTAGACTGCAAGAAGCACTTATACAAATGTGGCAACAAGAAGCAGCTTCAAGAGCTGCAATTGAAAATGGAACCGAGGAAGGGCTTGGAGACTCATCTGAATCAACCCCTATTGCTTTTCCTCAAGACACACACATGGAAGAAAGACCTGCTGAACCTGTTAGGAACAACCCACCTCACGGTACTCGTCGCTACGAGGATCAGATGGTCCCAAGTATCACTTCTTCCCATGTGAGAGTGGAAGAGGAAGAAACATCTTCAGACCTTCGAAACTCAGCAGCAGACAACAGAGCCGAAGTTCCTATAAATGTGACCACACAACAAAATGCAAGAGAGACAATGAATCAAGGAGGGTTGCCGAATGTAAATAGAAACCCTCGAGTACAGAATAATGGTACAATGTGGCTGAGAAATGCAGCTGAAGATTCCACGGCAGAATCTTCCAGTAGTACTAGGAGAGAAAGGGATGGGGGTGTAGTTCCAGTTTGGTCTCCCCCAGCATCTAACTTCTCAGAACAATTTGTAGATGATGAAAATGGTATTGGAGCCAGTTCATCTTACTTGCAGAGGCAGCATCCTCAGTCTCATCAATTGATGAACTGGACGCGGCTACCTCAGACTGGGTGA 2049 0.4602 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKQSLAHLDFSLRSLGTPLITKRSTNSVSSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTSQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLPPKRIIPGDASRCPCDTLVLEDELEKASNALLSRAWSPGWSNADKALTAFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPEYVLQAAGIELGSNYPLPIVGIDAAEVRLQEALIQMWQQEAASRAAIENGTEEGLGDSSESTPIAFPQDTHMEERPAEPVRNNPPHGTRRYEDQMVPSITSSHVRVEEEETSSDLRNSAADNRAEVPINVTTQQNARETMNQGGLPNVNRNPRVQNNGTMWLRNAAEDSTAESSSSTRRERDGGVVPVWSPPASNFSEQFVDDENGIGASSSYLQRQHPQSHQLMNWTRLPQTG 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01236 682 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 192 488 IPR036134 -
Spst8g01236 682 PRINTS DNA photolyase signature 352 370 IPR002081 -
Spst8g01236 682 PRINTS DNA photolyase signature 143 159 IPR002081 -
Spst8g01236 682 PRINTS DNA photolyase signature 332 348 IPR002081 -
Spst8g01236 682 PRINTS DNA photolyase signature 391 405 IPR002081 -
Spst8g01236 682 Pfam Blue/Ultraviolet sensing protein C terminal 511 626 IPR020978 -
Spst8g01236 682 NCBIfam cryptochrome photoreceptor 6 481 IPR014134 GO:0009785|GO:0009882
Spst8g01236 682 Gene3D - 134 293 - -
Spst8g01236 682 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Spst8g01236 682 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Spst8g01236 682 MobiDBLite consensus disorder prediction 499 540 - -
Spst8g01236 682 MobiDBLite consensus disorder prediction 610 682 - -
Spst8g01236 682 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Spst8g01236 682 PANTHER CRYPTOCHROME 6 490 IPR002081 -
Spst8g01236 682 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Spst8g01236 682 MobiDBLite consensus disorder prediction 640 682 - -
Spst8g01236 682 MobiDBLite consensus disorder prediction 519 536 - -
Spst8g01236 682 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Spst8g01236 682 Pfam DNA photolyase 7 163 IPR006050 -
Spst8g01236 682 Gene3D HUPs 8 206 IPR014729 -
Spst8g01236 682 FunFam Deoxyribodipyrimidine photo-lyase 301 490 - -
Spst8g01236 682 Pfam FAD binding domain of DNA photolyase 283 480 IPR005101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01236 Spst-Chr8 11375005 11379013 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01236 K12118 - gmx:100786551 1310.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01236 8 11375005 11379013 Spst8g01236 8 11375005 11379013 ECH
Spst8g01236 8 11375005 11379013 Spst9g01174 9 10753459 10768496 PCT