Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01169 ATGGCCTTGTGCAGGTGTCTCCCTTTTTGTACCGGAAAGAAAGAGAAAGGGAAGGGTACCGCTGAAGGGTCTTCAATAGGGGACCTTAAAGGTCAACTTGGTGGAATACAGCACAGGAAAATTTCATCAGAGAATCGTTGTTTGAAGCCGGCCACCCTTGATGTCACAGTACCCTGTGCTGTGCAGAAGAATTCCAGAGCAAACGTGAGGGTTATGAATCTTGAGAGTCCTGTGAAGACTGAAGTGGAGGAAGCTTATGAAGGGGAAGATGAGCATGAGGAGTCTCCTTCCATCAAGAGGGAGCTCTCTAATTTTGATCTTCAATTCCACCAAGCTGCTGCAAGCAAAGGAGGACATGATCCATCAAATGAAGAGATAAAATACCCCAGTTGGTGTGAAGACCAAGCTAACATTCAATTCGATGACAGAGACCATAAACACAGCAAAAAGAGTGATGATATCATCCAAAGTGGACATGTCAGTGATCCTGGGATTGGCAAGGCTGACTTTTGGGCTTATCCAAAGCTCAAGAGATCTTGTTCTGACCTTGAAAGAAGGGATGTACTCAGGAAGACTTCTCATCTCTTTCCTTCTTCTAAGTCACAGCCTTTTGATGATTTGCAGGGATTATCAGCAGATCAGATTGTTAATCTAGAAAGCCCCAGGTCTGTGATGACTCACTGCAGTGCTGATAGAGTGATGTTGAAAAGGCATTCCTCAAGTCAAGTTCTTCCTTCTAGAAGTAGAAGATTGTGGTGGAAGTTGTTCCTCTGGAGCCACAGGAATATACATAGACCTCAGTTAAGCCAATCGACACAAATACATCCTGCAATTGTTGCTTTAAGCAGTCAGTGTGGTTACTCCTCAGACACCCTTGAACCAAACAAAGGCAAGGCATTGAGAGATGAAGAATCACCCTCACCCACCTCATCTTTTGGGGAATACTTTCAGAAAAGCTGTGATGACCAAAATATTCCTAACCAAAGGTGGAGCAGATTTCACAAAGAAAAATTTGGTTTTTGGCCGCAGAATCAATGGGTGGCTTTCTCAACAGAATCATCCTCGCTTAGCAGAGTGGATGAGTGGGTGAAAGATCTCGAAATTCAGCGACCTCCTGAGGATGATTTTGATGATGACAACATTGGAAGCATTGCCTTCCCACCTTCTCCTGATGATGGTAGATCAATGGCAAGAAGCACATCTCTGTTGATTCGACATCCAGATGCCAATCTTGCCAAGGATATATTGAATGCCAATAGTGTGGTCCAGTCCCTGAACCCAGCCTCAACTGCAGCTCATATATCAGGCATTGGTATAAAAGCCATCCCCTCTCTTGCACACTTCTTCAGTCTCCGCTCTGTCAATTTGTCAAGCAATCTTATAGTCCACATAACGCCTGGATTTCTCCCAAAGAGTATTCATACACTGAATCTTTCAAGAAACAAAATCAGCACTATTGAGGGCCTCAGGGAATTAACCCGGTTGCGGGTACTTGATTTAAGTTATAATCGCATCTCAAGAATTGGACAAGGATTATCAAATTGTACCCGAGTCAAAGAGCTATATCTTGCTGGAAACAAGATAAGTGATGTTGAGGGGCTACACAGGCTATTAAAGCTAACAGTTCTGGATTTGAGCTTTAACAAGATCGCAACAACAAAAGCATTAGGCCAGCTGGTGGCCAACTACAACTCGCTTCAGGCCTTGAATCTGCTAGGAAATCCAATTCAAAGCAACATCAGTGATGACCAGTTGCGCAAAGCAGTTAGTGGTCTTCTTCCAAAGCTTGTGTACCTGAACAAGCAATCTATCAAGTCTCAAAGGGGACGAGAAATACTCACTGATAGTGTTGCCAAAGCTGCACTTGGGAACAGCGGCCACAACTCCTACAGAAGAGCACTAAAGAAAGGTGGTGGCCAAGGAGGGTCAAGTTCCTCCAGTATGCCTAGAAGCAGTGCGAGTGTTTCCCATAAAAGCAGGAACAGGTCAAGGAGCCGAACTAAGCACCATTAG 2013 0.4441 MALCRCLPFCTGKKEKGKGTAEGSSIGDLKGQLGGIQHRKISSENRCLKPATLDVTVPCAVQKNSRANVRVMNLESPVKTEVEEAYEGEDEHEESPSIKRELSNFDLQFHQAAASKGGHDPSNEEIKYPSWCEDQANIQFDDRDHKHSKKSDDIIQSGHVSDPGIGKADFWAYPKLKRSCSDLERRDVLRKTSHLFPSSKSQPFDDLQGLSADQIVNLESPRSVMTHCSADRVMLKRHSSSQVLPSRSRRLWWKLFLWSHRNIHRPQLSQSTQIHPAIVALSSQCGYSSDTLEPNKGKALRDEESPSPTSSFGEYFQKSCDDQNIPNQRWSRFHKEKFGFWPQNQWVAFSTESSSLSRVDEWVKDLEIQRPPEDDFDDDNIGSIAFPPSPDDGRSMARSTSLLIRHPDANLAKDILNANSVVQSLNPASTAAHISGIGIKAIPSLAHFFSLRSVNLSSNLIVHITPGFLPKSIHTLNLSRNKISTIEGLRELTRLRVLDLSYNRISRIGQGLSNCTRVKELYLAGNKISDVEGLHRLLKLTVLDLSFNKIATTKALGQLVANYNSLQALNLLGNPIQSNISDDQLRKAVSGLLPKLVYLNKQSIKSQRGREILTDSVAKAALGNSGHNSYRRALKKGGGQGGSSSSSMPRSSASVSHKSRNRSRSRTKHH 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01169 670 Gene3D Ribonuclease Inhibitor 514 608 IPR032675 -
Spst9g01169 670 SUPERFAMILY Outer arm dynein light chain 1 440 603 - -
Spst9g01169 670 ProSiteProfiles Leucine-rich repeat profile. 472 493 IPR001611 GO:0005515
Spst9g01169 670 ProSiteProfiles Leucine-rich repeat profile. 539 560 IPR001611 GO:0005515
Spst9g01169 670 FunFam Outer arm dynein light chain 1 protein 511 609 - -
Spst9g01169 670 Gene3D Ribonuclease Inhibitor 393 513 IPR032675 -
Spst9g01169 670 Pfam Leucine rich repeat 450 505 IPR001611 GO:0005515
Spst9g01169 670 FunFam Outer arm dynein light chain 1 protein 397 510 - -
Spst9g01169 670 ProSiteProfiles Leucine-rich repeat profile. 494 516 IPR001611 GO:0005515
Spst9g01169 670 MobiDBLite consensus disorder prediction 628 670 - -
Spst9g01169 670 SMART LRR_typ_2 448 470 IPR003591 -
Spst9g01169 670 SMART LRR_typ_2 492 515 IPR003591 -
Spst9g01169 670 SMART LRR_typ_2 537 559 IPR003591 -
Spst9g01169 670 MobiDBLite consensus disorder prediction 639 656 - -
Spst9g01169 670 SMART LRR_sd22_2 470 491 - -
Spst9g01169 670 SMART LRR_sd22_2 492 514 - -
Spst9g01169 670 SMART LRR_sd22_2 537 558 - -
Spst9g01169 670 SMART LRR_sd22_2 515 536 - -
Spst9g01169 670 MobiDBLite consensus disorder prediction 292 311 - -
Spst9g01169 670 Pfam Leucine Rich repeat 539 550 IPR001611 GO:0005515
Spst9g01169 670 ProSiteProfiles Leucine-rich repeat profile. 517 538 IPR001611 GO:0005515
Spst9g01169 670 MobiDBLite consensus disorder prediction 370 396 - -
Spst9g01169 670 PANTHER NISCHARIN RELATED 196 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01169 Spst-Chr9 10688014 10690502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01169 497 624 Receptor kinase-like Gene Family AT5G07280 35.878 7.54e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01169 - - gmx:100813969 1067.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01169 9 10688014 10690502 Spst9g01169 9 10688014 10690502 ECH
Spst8g01233 8 11344510 11350322 Spst9g01169 9 10688014 10690502 PCT