Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01233 ATGAACCCCCAGGCTCTTGAATTGCTGCAACATCCCAAAGCTTTTGAAGATTCCGGAACAAAGCACAGATACTGTCTGAGAGAGTTGCTGTTATCTTTGAGGAGCTGGCATGATTCTGCTTTACAAGTTCTTCAAACTGGGTATAGGTCTGTTTGGACAGGAAGATATTGTGGAGCTTTGCGGAGGAGCACACACAACTCTGGCCAACTCTTTAGAGATATCTTCACCAACCGGAATAGGCTTTGGTCTTTTTCTTTCCGGTTTGCAGATTTGCTCAGAGAGAGTGGGAGTGGAAGATCTTCAAAGGAAGACTTTAGCACTTTACTTGCCAAACTACAGTCTTCAAAAATAGCTTCAGTGCCAACCACTTTTAATGTCACAGTCTCCAATGGTATTCAGAAAAATTCAAGGTTCAATTCGAGGGTTATGAGTCTAGATACTTGTGCGGAGGCTGAGGTACAGGAAGCTTATGACAGGGAAGATGAGGATGGAAATTCACTGTTGATCAAGGGGGAACGCTCTGATTTTGATATCCAAGATCATGAAGCTGTTGCAGGGAAAGAATATGATGCAACTGATAAAGAGACAGAGTATCCCATTTTATCTGAAAACCAAGTCATCAAAGATTTGGAAGACAGAAACGATAAATACAGCCAAAAGAGTGTTGAAACAACTCAAAGTGGATACGTCAGTGATCCTGGAATTAGCAAAGCTGATTTGTGGACTTGCTCAAAGTTCAAGAGACACTTCTCTAACCTTGAAAAGTTTGATGAGCATGGAAAGAAAACTCATCATTCACCAGCTTTAAAGTCAAAGCCTTCTGAGAATTTTGTGGATTTATCAGAAATGAGCCCTAGGTCAGTAATGAGTCACTACAGTGCTGATAGTGTAATGTTGAAAAGGCACTCTTCAAGTCAGGTGCTTCCTTCCGGAAGAAAAAAATTGTGGTGGAAGATGATCTTGTGGAGCCACAGGAGCATAACTTTCCCAAGCAATTCAACACTTCCTGCTAGTGCTGCTTTAAATAGTGGGTACTCTTCAGACACCCTTGAACCAAAACATGGAAAGACATTGAGGCCTGCGAAATCTTCTGGTTCAATTACGACGGAATCCTTTAACAAAAGCAGAACTGGTAAAAATATAGATAATCAAAGGGGGAGCAGGTTTCAAAGTGACCAATGGATTGCTTTCTCCACAGAATCATCCTCTTTTGCCAGAGTGGATGCATGGGTAAAAAGTCTTGAAATTCAGCAACTACTTCCTGAGGATGATTTTGATGTTGACAATGCCAGAAGCATTGCCTTCCCACCTTCTCCTGATACCGGTGGAACAATGATGAGAGCCACATCTAAGTTGACTTATCCAGATGCCAATGTTTCAAAAGAAACTTTGACTGCCATTAATGTAGTCAAGTCTCTAAATCCAGCTTCAACTATCGCTCACATATGTGGTATTGGTGTAAAAGCCATCCCTGGTATATCACACTTATCCAATCTCCGCTCTGTCAACCTGTCAAACAATTTCATAGTTCACATCTCACCAGGATTTCTACCAAAGGGTATTCAAACACTTAACTTGTCAAGAAACAAGATCAGCACTCTTGACGGCCTCAGAGAACTGACCAAGTTGAGGGTACTTGACCTAAGTTACAACCGCATCTCGAGAATTGGACAAGGTTTGTCAAGTTGTACACTTGTCAAAGAACTATATCTTGTGGGGAACAAGATAAGTGACGCTGAAGGGCTACACAGGCTATTGAAGCTAACAGTTCTAGACTTGAGCTTCAATAAGATCACAACAACAAAAGCATTAGGCCAGCTAGTGGCTAACTACAACTCACTTAAGGCCCTTAATCTGCTTGGAAATCCGATTCAAAAGAACATCAGTCATGACCAGCTAAGTAAAGCAGTTTCTGGTCTTCTTCCAAAGTTGGTGTACCTGAACAAGCAACCTTTTAAGGATCATAGGACACGCGAAATATTAAGTAACAGTGTTGCCAGAGCTGCCCTTGGGAACAGCACGCGGAGCTGTGACAAAAGATCAATAAGAAGACTTGGCCATGGAGGATCAAGTTTTTCTAAAGGGTATAGAAGAAGTGCAAGTGTTTCCCACAAAAACATGAACGGAACAAGGAGGTGA 2139 0.418 MNPQALELLQHPKAFEDSGTKHRYCLRELLLSLRSWHDSALQVLQTGYRSVWTGRYCGALRRSTHNSGQLFRDIFTNRNRLWSFSFRFADLLRESGSGRSSKEDFSTLLAKLQSSKIASVPTTFNVTVSNGIQKNSRFNSRVMSLDTCAEAEVQEAYDREDEDGNSLLIKGERSDFDIQDHEAVAGKEYDATDKETEYPILSENQVIKDLEDRNDKYSQKSVETTQSGYVSDPGISKADLWTCSKFKRHFSNLEKFDEHGKKTHHSPALKSKPSENFVDLSEMSPRSVMSHYSADSVMLKRHSSSQVLPSGRKKLWWKMILWSHRSITFPSNSTLPASAALNSGYSSDTLEPKHGKTLRPAKSSGSITTESFNKSRTGKNIDNQRGSRFQSDQWIAFSTESSSFARVDAWVKSLEIQQLLPEDDFDVDNARSIAFPPSPDTGGTMMRATSKLTYPDANVSKETLTAINVVKSLNPASTIAHICGIGVKAIPGISHLSNLRSVNLSNNFIVHISPGFLPKGIQTLNLSRNKISTLDGLRELTKLRVLDLSYNRISRIGQGLSSCTLVKELYLVGNKISDAEGLHRLLKLTVLDLSFNKITTTKALGQLVANYNSLKALNLLGNPIQKNISHDQLSKAVSGLLPKLVYLNKQPFKDHRTREILSNSVARAALGNSTRSCDKRSIRRLGHGGSSFSKGYRRSASVSHKNMNGTRR 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01233 712 ProSiteProfiles Leucine-rich repeat profile. 542 564 IPR001611 GO:0005515
Spst8g01233 712 PANTHER NISCHARIN RELATED 273 700 - -
Spst8g01233 712 FunFam Outer arm dynein light chain 1 protein 445 558 - -
Spst8g01233 712 MobiDBLite consensus disorder prediction 681 712 - -
Spst8g01233 712 FunFam Outer arm dynein light chain 1 protein 559 657 - -
Spst8g01233 712 Gene3D Ribonuclease Inhibitor 443 560 IPR032675 -
Spst8g01233 712 Pfam Leucine-rich repeat 522 610 - -
Spst8g01233 712 ProSiteProfiles Leucine-rich repeat profile. 587 608 IPR001611 GO:0005515
Spst8g01233 712 ProSiteProfiles Leucine-rich repeat profile. 520 541 IPR001611 GO:0005515
Spst8g01233 712 SMART LRR_typ_2 496 518 IPR003591 -
Spst8g01233 712 SMART LRR_typ_2 540 563 IPR003591 -
Spst8g01233 712 SMART LRR_typ_2 585 607 IPR003591 -
Spst8g01233 712 SMART LRR_sd22_2 518 539 - -
Spst8g01233 712 SMART LRR_sd22_2 585 606 - -
Spst8g01233 712 SMART LRR_sd22_2 540 562 - -
Spst8g01233 712 SMART LRR_sd22_2 563 584 - -
Spst8g01233 712 MobiDBLite consensus disorder prediction 361 385 - -
Spst8g01233 712 Gene3D Ribonuclease Inhibitor 561 657 IPR032675 -
Spst8g01233 712 MobiDBLite consensus disorder prediction 694 712 - -
Spst8g01233 712 MobiDBLite consensus disorder prediction 346 385 - -
Spst8g01233 712 Coils Coil 200 227 - -
Spst8g01233 712 SUPERFAMILY Outer arm dynein light chain 1 490 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01233 Spst-Chr8 11344510 11350322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01233 491 652 Receptor kinase-like Gene Family AT5G56040 32.778 8.00e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01233 - - gmx:100801034 917.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01233 8 11344510 11350322 Spst8g01233 8 11344510 11350322 ECH
Spst8g01233 8 11344510 11350322 Spst9g01169 9 10688014 10690502 PCT