Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00905 ATGGTCCTTGCATTTACTAATGTTTTTTTGCAGGGTTTTCTCAAAGCAGGAGCAATGTCTTCCTCTCATCTTCCTGCTACAACTGAGTCAATTGCTCTGGCAACTGAGGCGGCAAGTCCAACTGAGGCCATCTCCATTCTTTATCGGGTACTTGATGATCCTTCTTCTTCACCAGATGCTCTGCGTATCAAAGAGCAAGCAATCACACTCCTCACTAAGCATCTCACGGAAGAGAATAGGGGAGAGGATCTGCGCAGCCTTCTCACTCAGTTGAGGCCATTCTTCTCCTTGATACCCAAGGCAAAAACTGCAAAGATTGTTAGGGGAATAATTGACTCCGTTGCTAAAATACCAGGGACGTCTGATCTTCAAATTGCACTATGTAAAGAAATGGTGCTATGGACTCGTGCTGAAAAGCGTACCTTTCTGAGGCAGCGAGTTGAGGCAAGACTTGCAGCCCTTCTGATGGAAAATAAGGAGTATTCTGAAGCGTTGACTCTTCTTTCTGGCTTGGTCAAAGAGGTTAGGAGATTAGATGACAAGCTTCTTCTTGTAGACATAGATTTGCTGGAAAGCAAGCTGCATTTCTCCTTAAGAAACCTTCCCAAGGCAAAAGCTGCCCTCACGGCAGCAAGAACAGCTGCAAATGCGATCTATGTGCCTCCAGCTCAACAAGGTGCCATAGATCTGCAGAGTGGAATACTTCATGCCGAGGAGAAGGATTATAAAACTGCTTATAGCTATTTCTTTGAAGCTTTTGAATCATTCAATGCTCTTGATGACCCCAAGGCTGTTTTTAGCCTGAAGTATATGTTGTTGTGTAAGATCATGGTGAATCAAGCTGATGACGTGGGGGGAATTATTTCCTCTAAAGCAGGCTTGCAATATCTTGGGCCTGACTTGGATGCTATGAAAGCTGTTGCTGATGCACATTCTAAGAGGTCCCTTAGGTTGTTTGAAATTGCTTTGCGGGACTACAAGCCACAGTTGGAGGAGGACCCAATTGTCCACAGGCACCTTCAATCCCTGTACGATACCCTTCTGGAGCAGAATCTTTGTAGATTGATTGAGCCTTTCTCAAGGGTTGAGATTGCACATATTGCTGAACTTATTGAACTTCCCATCGATCATGTGGAGCGAAAGTTGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGAACATTGGATCAAGGTGCGGGATGCCTTGTCATATTTGACGATCCCAAGACTGATGCTATATATCCTGCTACCCTGGAGACCATTTCCAATATTGGGAAAGTTGTCGACAGTCTTTATGTTAGGTCTGCAAAGATAATGGCATGA 1323 0.4444 MVLAFTNVFLQGFLKAGAMSSSHLPATTESIALATEAASPTEAISILYRVLDDPSSSPDALRIKEQAITLLTKHLTEENRGEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQIALCKEMVLWTRAEKRTFLRQRVEARLAALLMENKEYSEALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALDDPKAVFSLKYMLLCKIMVNQADDVGGIISSKAGLQYLGPDLDAMKAVADAHSKRSLRLFEIALRDYKPQLEEDPIVHRHLQSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPIDHVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNIGKVVDSLYVRSAKIMA 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00905 440 ProSiteProfiles PCI domain profile. 241 409 IPR000717 -
Spst9g00905 440 SMART PCI/PINT associated module 161 337 - -
Spst9g00905 440 Pfam PCI domain 303 404 IPR000717 -
Spst9g00905 440 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 411 436 IPR040780 -
Spst9g00905 440 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 36 146 IPR040773 -
Spst9g00905 440 SUPERFAMILY "Winged helix" DNA-binding domain 332 414 IPR036390 -
Spst9g00905 440 Coils Coil 144 164 - -
Spst9g00905 440 Gene3D - 64 439 - -
Spst9g00905 440 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 42 436 - -
Spst9g00905 440 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 338 421 IPR000717 -
Spst9g00905 440 FunFam 26S proteasome non-ATPase regulatory subunit 11 64 439 - -
Spst9g00905 440 SUPERFAMILY TPR-like 149 341 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00905 Spst-Chr9 7916230 7917552 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00905 K03036 - gmx:100780845 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00905 9 7916230 7917552 Spst8g01765 8 21241491 21242756 PCT